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7 protocols using glutaminase

1

Comprehensive Protein Expression Analysis

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Cells and resected tumor tissues were subjected to protein extraction using tissue protein reagents (T-PER, Pierce Biotechnology, Rockford, IL, USA). Proteins were separated by SDS-PAGE and then transferred to PVDF membranes. The membranes were incubated with the following antibodies: cyclin D1, β-catenin, Src, phospho-Src, Akt, phospho-Akt, Smad2/3, phospho-Smad2/3, Thromboxane A2 Receptor (TXA2R) (Santa Cruz Biotechnology, Santa Cruz, CA, USA), Glucose Transporter-1 (GLUT1), PKM2, SLC1A5, SLC7A5, glutaminase, CD41, CD62P, CD45, SDF-1α, CXCR4 (Abcam, Cambridge, MA, USA), and Glyceraldehyde-3-phosphate Dehydrogenase (GAPDH) (R&D Systems, Minneapolis, MN, USA). The reacted proteins were further determined with horseradish peroxidase-labeled IgG, visualized using Enhanced Chemiluminescence (ECL) Western blotting reagents, and quantified by the optical densitometry (Image Master ID, Pharmacia Biotech, Upsalla, Sweden) of developed autoradiographs.
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2

Western Blot Analysis of Protein Targets

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The total protein was extracted by SDS buffer, and then the protein concentrations were measured using a bicinchoninic acid (BCA) kit (Thermo Fisher Scientific). Subsequently, the proteins (20 µg) were separated by 10% SDS-PAGE, followed by transfer to polyvinylidene fluoride membranes (Millipore, Billerica, MA, USA). After blocking with 5% non-fat milk, the membranes were incubated with the primary antibodies at 4°C overnight, using antibodies for PD-L1 (Cell Signaling Technology, Danvers, MA, USA, no 13684, at a dilution of 1:1,000), glutaminase (Abcam, Cambridge, UK, cat. no ab156876; dilution 1:1,000), β-actin (Cell Signaling Technology, no 4970; dilution 1:1,000), and glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (Sigma-Aldrich, no G9545; dilution 1:5,000). Then, the membranes were incubated with HRP-conjugated secondary antibodies (Jackson ImmunoResearch, West Grove, PA, USA; dilution 1:10,000) for another 1 hour at room temperature. The immune complexes were detected using an enhanced chemiluminescence kit (Millipore). The results were normalized to GAPDH or β-actin to correct for the differences in the loading of the proteins. Densitometric analysis was conducted using AlphaView SA software.
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3

Metabolic Profiling of Heart Tissue

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Snap-frozen heart samples were homogenized and lysed in a buffer containing 25 mM Tris·HCl, 150 mM NaCl, 2 mM EGTA, 5 mM EDTA, 0.5% NP-40, and a protease and phosphatase inhibitor cocktail (Sigma-Aldrich). Protein concentration was determined using the Bradford reagent (Sigma-Aldrich). Tissue homogenates were separated by SDS-PAGE and transferred to nitrocellulose membranes followed by Western blot analysis. Antibodies used were as follows: glucose transporters 1 and 4 (GLUT1 and GLUT4; Abcam), LDHA (Proteintech), hexokinase 1 (Abcam), PDK4 (Abcam), pyruvate dehydrogenase E1α (PDH-E1α; Abcam), phospho-PDH-E1α (S293, p-PDH-E1α; Abcam), pyruvate carboxylase (Santa Cruz), glutamine synthetase (Abcam), glutaminase (Abcam), O-linked β-N-acetylglucosamine (GlcNac RL2; Abcam), glutamine fructose amidotransferase-2 (GFAT2; Abcam), and GAPDH (Sigma-Aldrich).
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4

Investigating Glutamate Metabolism in Neuroinflammation

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Lysozyme (Sigma #L6394), LPS (Sigma #L2630), Glutamate assay kit (Sigma #MAK004) and Minocycline were purchased from Sigma. TLR4 (Abcam #ab22048), PGP9.5 (Abcam #ab108986), GOT (Abcam #ab221939) and Glutaminase (Abcam #ab156876) antibodies were purchased from Abcam. NFκB p65 (CST #8242), Glutamate dehydrogenase (CST #80063), GOT1 (CST #34423), and GOT2 (CST #71692) antibodies were purchased from Cell Signaling Technology. PEPinh MyD, PEPinh TRIF were purchased from Invivogen. Cu-CPT22 (#4884), TAK-242 (#6587), and Dynasore (#2897) were purchased from Tocris. TRIF siRNA (Thermo, #4457308), GOT2 siRNA (Thermo, #4457308), HMGB1 (Thermo #34-8401-82), IFNα mouse ELISA kit (Thermo #BMS6027) and IL-10 mouse ELISA kit (Thermo #BMS614) were purchased from ThermoFisher Scientific. IFN-β ELISA kit (PBL Assay Science #424001) was purchased from PBL Assay Science and mouse inflammatory cytokines ELISA array kit (Qiagen #336161) was purchased from Qiagen. Cell culture media and reagents were purchased from Thermo (Invitrogen). All other reagents were purchased from Sigma until stated otherwise.
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5

Ferroptosis Regulation Protocol

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β-elemene (>98%) (#E4418) was purchased from LKT. Stock solution at 100 mg/ml was made in ethanol and stored at -4°C. Cetuximab (#33657) was purchased from MCE. Antibodies against GPX4 (#GR251529-34), HO-1 (#GR3187585-3), Glutaminase (#GR3299063-1), SLC40A1 (#GR215168-39), Transferrin (#GR3207592-9), SLC7A11 (#GR3235736-6) were purchased from Abcam. N-Cadherin (#13116S), E-Cadherin (#14472S), MMP9 (#13667S), snail (#3879T), slug (#9585T), and GAPDH (#2118S) antibodies were obtained from Cell Signaling Technology. Vimentin (#SA10106DB) was purchased from ABGENT. Ki67 (#66434-1-Ig) was purchased from Proteintech. Deferoxamine (#CS-4479), Ferrostain-1 (#HY-100579), Necrostain-1 (#HY-15760) were purchased from MCE. Z-VAD-FMK (#V116) was obtained from Sigma Aldrich. Liproxstatin-1 (#S7699) and RSL3 (#S8155) were purchased from Selleck Chemical.
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6

Quantitative Protein Analysis Workflow

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Whole steps of tissue protein extraction, cell lysate preparation, SDS-PAGE, Western blotting and quantitative calculation were performed as reported procedures [32 (link),33 (link)]. Interesting molecules corresponding to the indicated antibodies were cyclin D1 (sc-56302), β-catenin (sc-133240), HMGB1 (sc-135809), RAGE (sc-74535), Akt (sc-5298), phospho-Akt (sc-293125), SLC7A5 (sc-374232), Smad2/3 (sc-398844), phospho-Smad2/3 (sc-11769) (Santa Cruz Biotechnology, Santa Cruz, CA, USA), GLUT1 (ab115730), PKM2 (ab137852), SLC1A5 (ab84903), glutaminase (ab150474), CD62P (ab59738), MPO (ab65871) (Abcam, Cambridge, MA, USA) and Glyceraldehyde-3-Phosphate Dehydrogenase (AF5718, GAPDH) (R&D Systems, Minneapolis, MN, USA).The proteins of interest were visualized and quantified using a G:BOX mini multi-fluorescence and chemiluminescence imaging system (Syngene, Frederick, MD, USA).
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7

Quantitative Western Blot Analysis

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Cells or EV pellets were lysed in M-PER mammalian protein extraction reagent (Thermo Scientific). Proteins from lysates were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). After electrophoretic transfer to polyvinyldifluoridene (PVDF) membranes (Millipore, Billerica, MA, USA), proteins were treated with purified primary antibodies for glutaminase (1:1000; Abcam), GFAP (1:1000; Cell Signaling Technologies), β-actin (1:5000; Sigma Aldrich), flotillin-2 (1:5000; BD biosciences), and ALG-2 interacting protein (Alix) (1:1000; Cell Signaling Technologies) overnight at 4 °C followed by a horseradish peroxidase-linked secondary anti-rabbit or anti-mouse antibody (1: 5000; Icllab). Antigen–antibody complexes were visualized by Pierce ECL Western Blotting Substrate. Mitochondrial protein was isolated by the Mitochondria Isolation Kit for Cultured Cells (ab110171, Abcam). ATP5A (1:1000; Abcam) was used as a mitochondrial marker to indicate that there is no mitochondria contamination in the cytosol.
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