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23 protocols using ionomycin

1

Cytokine Profiling of Tumor-Infiltrating Cells

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NPK-C1 tumors were harvested and dissociated to single-cell suspensions
as described above. 5–10×106 total cells were
resuspended in 50 μL X-VIVO15 medium (Lonza; Basel, Switzerland) and
plated in a 96-well round bottom plate with 50 μL of X-VIVO15 medium
containing phorbol myristate acetate (PMA) and ionomycin (InvivoGen; San Diego,
CA) to final concentrations of 50 ng/mL PMA and 500 ng/mL ionomycin. After 30
minutes, 100 μL of X-VIVO15 medium containing PMA/ionomycin and Brefeldin
A at a final concentration of 5 μg/mL (BioLegend; San Diego, CA) were
added. After 3.5 hours (4 hours total stimulation), cells were washed and fixed
with the FoxP3 Fix/Perm Kit (eBioscience; San Diego, CA) for 30–60
minutes on ice in the dark. Cells were then stained for surface and
intracellular markers as described and acquired on a Cytek Aurora spectral flow
cytometer (Cytek; Fremont, CA). All antibodies used are listed in Supplementary Table
S1
.
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2

Dissecting T-cell Activation Pathways

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Ionomycin stimulation was performed by perfusing Ionomycin (Invivogen) at 10 μM final concentration. Antibody stimulations were performed by pairing CD8 + T cells with anti-CD3/CD28-coated microbeads (Thermofischer Scientific). For SOC channels activity experiments, thapsigargin (focus biomolecules) was added at 2 μM final concentration, and then a 2 mM Ca 2+ solution was subsequently injected 6 minutes later. Calcium channel inhibitors Synta66 (Sigma Aldrich) and BTP2 (Abcam) were added at a final concentration of 10 μM to assess the implication of SOC calcium channels in the thapsigargininduced calcium entry.
For the cell pairing experiments, first, allogenic healthy CD8 + T lymphocytes were activated by anti-CD3/CD28 beads at a 1 : 1 ratio for 3 days and cultured 7 days with 30 U ml -1 of human recombinant IL-2. Activated allogenic healthy CD8 + T lymphocytes were subsequently pulsed with or without 1 μg ml -1 of a cocktail of superantigens (SEA and Tsst-1; Sigma-Aldrich) for 30 min at 37 °C and AML blast cell was stained with membrane dye DiI (Thermo Fischer Scientific) before cell-cell pairing experiments.
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3

Characterization of PBMC Immune Profiles

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PBMC from the WIHS repository were thawed and incubated for 48 hours and during the final 5 hours of incubation the cultures were supplemented with Brefeldin A (1:100, BD), PMA (50ng/ml, Invivogen) and Ionomycin (1ug/ml, Invivogen). The cells were washed, stained for viable cells (LIVE/DEAD Aqua Fixable Dead Cell Stain Kit, Invitrogen), surface stained, fixed/permeabilized (Fix/Perm Kit BD Biosciences) and stained for intracellular AID-PerCP (IC39101C, RnD System). The following antibodies were used for immunophenotyping of PBMC: CD19-ECD (IM2708U, Beckman Coulter), CD86-AF-700, CD10-PE-Cy7, CD4-Pacific Blue, CD127-APC-H7, CD71-FITC, CD38-PE, CD25-PE, CD24-PercpCy5.5 (all antibodies were purchased from BD Biosciences except when stated otherwise). All samples were acquired on an LRSII (BD, Bioscience) flow cytometer and the data were analyzed using FlowJo software (Tree Star Inc).
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4

Quantifying Intracellular IL-10 in Bregs

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To determine endogenous intracellular IL-10 production, PBMC were cultured for 48 hours; during the final 5 hours of incubation the cultures were supplemented with Brefeldin A (1∶100, BD), PMA (50 ng/ml, Invivogen) and Ionomycin (1 ug/ml, Invivogen). After incubation the cells were washed, stained for viable cells (LIVE/DEAD Aqua Fixable Dead Cell Stain Kit, Invitrogen), surface stained, fixed/permeabilized (Fix/Perm Kit BD Biosciences) and stained for intracellular IL-10 (IL-10-AF-647, eBioscience). To determine spontaneous expression of IL-10 by Bregs from HIV-infected individuals and healthy controls, PBMCS were incubated overnight, stimulated for the final 5 hours and stained as described for healthy controls. The following antibodies were used for immunophenotyping of PBMC: CD19-ECD (Beckman Coulter), PD-L1-PE-Cy7 (eBioscience), CD24-PE, CD38-FITC, HLA-DR-PE-Cy7, CD4-Pacific Blue, CD8-APC-H7, Lineage-1-FITC, CD11c- AF-700, HLA-ABC-PE-C7 and CD107a-PE-C5 (BD, Bioscience). HIV-specific CD8+ T cells were identified by binding to MHC-1-APC Dextramer® (Immudex) and HIV-infected CD4+ T cells were identified by binding to KC-57-PE antibody (Beckman Coulter). All samples were acquired on an LRSII (BD, Bioscience) flow cytometer and the data was analyzed using FlowJo software (Tree Star Inc).
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5

Isolation and Activation of Splenic CD8+ T Cells

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Splenic CD8+ T cells were isolated by negative selection using the MojoSort Mouse CD8+ T Cell Isolation Kit (Biolegend) following the manufacturer's instructions. Isolated cells were plated at 2×106 per mL in RPMI 1640 containing 2.0 mM L-glutamine and 25 mM HEPES, supplemented with 10 mM Sodium Pyruvate, nonessential amino acids, 100 U/ml penicillin/streptomycin, 55 μM β-ME, and 10% fetal calf serum (complete media). Cells were stimulated with 1 μg/mL ionomycin (Invivogen) and 1 ng/mL phorbol myristate acetate (PMA, Invivogen) for 7 days, with complete media supplemented with 200 U/mL recombinant human IL-2 added on days 3 and 6. Following stimulation, cells were resuspended at 5×105 per mL in RPMI 1640 supplemented with 0.1% bovine serum albumin, and were incubated at 4°C for 60 min with or without 100 nM (±)-AMG 487 (R&D Systems). Cells were then plated in the top well of 96 well transwell plate (3 μm polycarbonate membrane pore, Corning). The bottom well of the plate contained RPMI 1640 supplemented with 0.1% BSA, either with or without recombinant mouse CXCL9 or CXCL10 (Biolegend). Cells were allowed to migrate for 1 hr at 37°C, prior to data collection with a MACSQuant VYB flow cytometer (Miltenyi Biotech) and analysis using FlowJo version 10.
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6

NFAT-Luc T Cell Activation Assay

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Jurkat/NFAT-Luc T cells were seeded 16 h earlier, followed by incubation with different concentrations of human IL-1Ra for an additional 2 h. T cell activation was induced by adding 1.5 µg/ml ionomycin (Sigma-Aldrich) and 1 µM phorbol ester (PMA) (Selleck Chemicals, Houston, TX, USA) for 4 h. Luciferase assay was performed following the manufacturer’s guideline. In brief, the detection reagent, QUANTI-LucTM Gold (InvivoGen) was added to the supernatant of ionomycin/PMA induced-Jurkat/NFAT-Luc T cells. Luciferase activities were measured by a Varioskan Flash spectral scanning multimode reader (Thermo Fisher Scientific, Waltham, MA, USA).
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7

IFN-γ ELISPOT Assay for PBMCs

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MultiScreenHTS-IP, 0,45µm, 96-well plates (Merck Millipore, Burlington, Massachusetts, USA) were coated overnight with anti-human IFN-γ monoclonal antibody (clone 1-D1K, MABTECH, Stockholm, Sweden) diluted 1/100 in PBS at 4°C. The next day plates were washed with PBS and then blocked with R10 medium for 60 min. 2 x 105PBMCs/per well in 200 µl volume were loaded onto the plate supplemented with PTE Gag peptide pool (NIH reagent program) at 100 ng/ml concentration. Samples were run in two conditions: 7 days Gag prestimulated PBMCs and overnight rested non-stimulated PBMCs, each in duplicates for a total duration of 36 h at 37°C 5% CO2. Duplicate positive controls were stimulated with PMA (50 ng/ml, Invivogen) and Ionomycin (500 ng/ml, Invivogen). PBMCs from healthy donors were included as to estimate non-specific background signal. After incubation plates were washed with PBS and incubated with biotinylated IFN-γ detection antibody (clone 7-B6-1, MABTECH) diluted 1/100 PBS-0,05 Tween- 0,5% BSA for 2 h. Revelation was performed using HRP Streptavidin for ELISPOT (BD Biosciences) and AEC Substrate Set (BD Biosciences) according to manufacturer’s instructions. Plates were read and analyzed using Easy-Count and the SmartCount (ImmunoSpot, Bonn, Germany) software.
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8

Quantifying IFN-γ Production in Activated T-cells

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We evaluated the immunological responsiveness of T-cells from different organs by quantifying the intracellular IFN-γ production in the CD8+ and CD4+ T-cells isolated from the immunized mice using a previously reported method.[24 (link)] Briefly, we prepared single cell suspensions from the lung, spleen and LN harvested 7 days after the boost immunization, using the procedure described above. Cells were cultured in Iscove modified Dulbecco medium media (Thermo Fisher Scientific) supplemented with 10% HI-FBS, 2 mM L-glutamine and 1% penicillin/ streptomycin at 37 °C. Cells from spleen and LN were plated on a 6-well plate at a 7 × 106 cells/well and cultured in presence of monensin (Sigma) and 1 μg mL−1 of SIINFEKL (InvivoGen) or 100 μg mL−1 OVA (InvivoGen) for 6 hours to re-stimulate OVA-specific CD8+ or CD4+ T-cells, respectively. In parallel, cells from the lung were plated in the same manner and re-stimulated with 1 μg mL−1 ionomycin and 50 ng mL−1 PMA (InvivoGen) for 4 hours. Cells from all three organs were additionally treated with 5 μg mL−1 brefeldin A (Thermo Fisher Scientific) for 2 and 3 hours to inhibit secretion of newly produced IFN-γ from CD8+ and CD4+ T-cells, respectively, prior to the cell collection. Cells were then stained for flow cytometric analysis.
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9

Quantitative Assessment of NETosis Induction

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Freshly isolated human PMN and PBMCs or murine bone marrow cells were adjusted to a concentration of 2 × 106 cells/ml in HBSS containing 5.55 mM glucose, 1.2 mM calcium, and 0.5 mM magnesium (Thermo Fisher Scientific) and plated in 96-well plates (Greiner Bio-One, Frickenhausen, Germany) in a final cell density of 1 × 106 cells/ml. The DNA dye SYTOX Green (Thermo Fisher Scientific) was added in a final concentration of 2.5 μM. Diamonds of 10 and 1000 nm were added in a final concentration of 200 μg/ml or as indicated. The traditional NETosis-inducing stimuli ionomycin (InvivoGen, San Diego, CA, USA) or PMA (Sigma, Darmstadt, Germany) were added in final concentrations of 1 μg/ml or 100 ng/ml, respectively. Plates containing PMA, ionomycin, 10 or 1000 nm diamonds in 100 μl of HBSS, respectively, were incubated at 37°C and 5% CO2 prior to addition of cells to equilibrate pH. Living cells were added and plates were covered. DNA externalization was analyzed for 210 min. on an Infinite® 200 PRO plate reader (TECAN, Crailshaim, Germany) under controlled temperature. Excitation was performed at 485 nm and emission was detected at 535 nm. Values displayed in the graphs were normalized according to absorption or addition of fluorescence by 10 or 1000 nm diamonds, respectively.
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10

Intracellular Cytokine Profiling of Immune Cells

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To determine the intracellular cytokine production of mononuclear cells from spleen and liver, up to 5.0 × 106 cells per mL were stimulated with phorbol 12-myristate 13-acetate (50 ng) and ionomycin (InvivoGen, San Diego, CA) (500 pg) in complete media with Golgi plug (BD Biosciences, San Jose, CA) (1 μL) and incubated at 37°C for 5 hours in the presence of 5% CO2. At the end of 5 hours, stimulated cells were washed, stained with fluorochrome conjugated mAbs and analyzed using flow cytometry.
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