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20 protocols using rpmi 1640 basal medium

1

Differentiation of iPSCs into Cardiomyocytes

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The differentiation of iPSCs into cardiomyocytes was performed according to the method previously described [37 (link)]. Briefly, before differentiation, iPSCs were passaged at a 1:10 ratio, and cardiomyocytes differentiation was initiated when the cells reached about 80% confluence. During the differentiation, the medium was changed every other day. First, iPSCs were treated with CDM3 (a chemical-defined medium with three components) supplemented with CHIR99021 (Selleck, Shanghai, China) for 2 days. The CDM3 included recombinant human albumin (Sciencell Research Laboratories, Carlsbad, CA, USA), L-ascorbic acid 2-phosphate (Wako Chemicals, Osaka, Japan), and Roswell Park Memorial Institute (RPMI) 1640 basal medium (Thermo Fisher). Second, cells were cultured for another 2 days in CDM3 supplemented with WNT-C59 (Selleck). The medium was then replaced with the RPMI 1640 basal medium supplemented with a B27-supplement (Thermo Fisher) for 6 days, and the metabolic purification of the iPSC-CMs was carried out by replacing the medium with a RPMI 1640 medium with no glucose (Thermo Fisher), supplemented with a B27-supplement for 10 days. After being maintained in the RPMI 1640 basal medium supplemented with a B27-supplement for 6 days, the cardiomyocytes were dissociated with the STEMdiff™ Cardiomyocyte Dissociation Kit (STEMCELL Technologies).
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2

Cardiomyocyte Differentiation of iPSCs

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As the method previously described [48 (link)], iPSCs were dissociated to aggregates by 0.5 mM EDTA (Thermo Fisher Scientific) and seeded on a Matrigel-coated 6-well plates in mTesR1 containing 10 µM Y27632 (STEMCELL Technologies). The medium was refreshed daily with mTesR1. After 5 days, confluence reached ~90%, the medium was changed to CDM3 medium (including L-ascorbic acid 2-phosphate (Wako Chemicals USA, Richmond, VA, USA) and recombinant human albumin (Sciencell Research Laboratories, Carlsbad, CA, USA) dissolved in the RPMI basal medium (Gibco)) supplemented with 4 μM CHIR99021 (Selleck, Houston, TX, USA) for two days, then the media was switched to CDM3 medium supplemented with 2 μM WNT-C59 (Selleck) for two days. Subsequently, the cells were cultured in the RPMI 1640 basal medium supplemented with B27-supplement (Thermo Fisher Scientific) for 8 days, during which spontaneous contraction can be observed. The medium was changed every other day during the differentiation.
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Cardiomyocyte Differentiation from Human iPSCs

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Human iPSC lines (iPS IMR90-1) were obtained from the Wicell Research Institute (https://www.wicell.org/). Differentiation of hiPSCs to cardiomyocytes (hiPSC-CMs) employed a protocol published previously (Dewar et al., 2017 (link)). In brief, hiPSCs were maintained on Corning Matrigel (0.5 mg/six-well plate, dissolved in DMEM/F-12 medium) cultured in mTeSR1 medium (StemCell Technologies, Vancouver, BC). Cells were passaged every 4 days using Versene solution (Thermo Fisher, Waltham, MA) and were then seeded on a six-well Matrigel-coated plate at a density of 100,000 cells cm−2 in mTeSR1 medium. The medium was changed daily, and after 3–4 days, when the monolayer of cells reached >90% confluency, the mTeSR1 medium was replaced with Roswell Park Memorial Institute (RPMI) 1640 basal medium (Thermo Fisher, Waltham, MA) plus B27 without insulin supplement (Thermo Fisher) containing 12 µM CHIR99021 (R&D Systems) for 24 h, followed by 5 mM IWP4 (Tocris) for 2 days without medium change. The medium was changed to RPMI 1640 plus B27 complete supplement, and then subsequently, the medium was changed every 2–3 days. Robust spontaneous beating of the monolayer was observed by day 12.
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Differentiation of hiPSCs to Ventricular Cardiomyocytes

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Human iPSC lines were obtained from the Wicell Research Institute (iPS IMR90–1) (https://www.wicell.org/) and the Allen Institute (https://alleninstitute.org/). Differentiation of hiPSCs to ventricular cardiomyocytes (hiPSC-CMs) employed a protocol published previously. In brief, hiPSCs were maintained on a Corning Matrigel (0.5 mg/ 6-well plate, dissolved in DMEM/F-12 medium) cultured in mTeSR1 medium (StemCell Technologies, Vancouver, BC). Cells were passaged every 4 days using Versene solution (ThermoFisher, Waltham, MA) and were then seeded on a 6-well Matrigel-coated plate at a density of 100,000 cells cm-2 in mTeSR1 medium. The medium was changed daily, and after 3 to 4 days, when the monolayer of cells reached >90% confluency, the mTeSR1 medium was replaced with Roswell Park Memorial Institute Medium (RPMI) 1640 basal medium (ThermoFisher, Waltham, MA) plus 2% B27 without insulin supplement (ThermoFisher) containing 12 μM CHIR99021 (R&D Systems) for 24 h, followed by 5 mM IWP4 (Tocris) for 2 days without medium change. The medium was changed to RPMI 1640 plus B27 complete supplement, and then subsequently the medium was changed every 2 to 3 days. Robust spontaneous beating of the monolayers was observed by day 12.
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5

Dermal Fibroblast Culture Protocol

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Explants of dermal biopsies (~ 3 mm) were minced and placed in a 100-mm TC-treated tissue culture dish (Corning Life Science) with 5 mL fibroblast medium (Gibco AmnioMax-C100 Basal Medium with 15% AmnioMax-C100 Supplement (Invitrogen)) and placed in 37°C humidity incubators with 5% CO2 atmosphere. Media was replaced every 3–4 days until fibroblast outgrowths from one explant were a quarter of the size of the dish. Fibroblasts were passaged into a new dish by trypsinization, and grown in modified fibroblast medium (1 part AmnioMax-C100 medium (as described above), 1 part RPMI-1640 medium (RPMI-1640 basal medium (Invitrogen) supplemented with 1X Primocin (Invivogen), 1% non-essential amino acids, and 10% fetal bovine serum (Corning Life Science)). Media was replaced every 3–4 days and allowed to reach 90% confluence prior to passaging. Fibroblast cultures were passaged between 2–20 times prior to collection for DNA, RNA, cryopreservation, or cell activation.
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6

Murine Microglial Cell Line N13: Resveratrol and LPS Treatments

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The murine microglial cell line N13 was grown in RPMI 1640 basal medium enriched with 10% heat-inactivated fetal bovine serum (FBS), 1% L-glutamine (2 mM), and 1% penicillin-streptomycin solution (100 U/mL penicillin; 100 μg/mL streptomycin) (Life Technologies-Invitrogen, Milan, Italy) in a CO2 incubator set to 5% CO2 at 37 °C in a humidified atmosphere until 70% confluence. For the treatments, we used 10 μM resveratrol (trans-3,40, 5-trihydroxystilbene; purity > 99% GC; Sigma Aldrich, St. Louis, MO, USA) and the cell wall component LPS of Salmonella typhimurium at a concentration of 100 ng/mL. N13 cells were submitted to a single treatment with LPS or resveratrol and to a combined treatment with resveratrol, followed up an hour later by LPS (Sigma Aldrich) for 72 h.
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7

Fibroblast Isolation and Sulforaphane Treatment

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Fibroblasts were obtained from skin biopsies of participants performed as previously described (Napoli et al., 2011 (link)) isolated from the same skin area (punch biopsy on left upper back) to minimize variances due to body site or different exposure to the external milieu and grown to 75 to 80% confluency to the evaluation of mitochondrial outcomes or proteomics analysis.
The passage number of cells used for all measurements was 4–6. Cells were grown in a 1:1 solution of AmnioMAX-C100 and RPMI-1640 Basal Medium supplemented with 10% fetal bovine serum (Invitrogen), 1X penicillin/streptomycin/glutamine (Invitrogen), 1% non-essential amino acids (Invitrogen), and 1:250 fungizone (J R Scientific, Woodland, CA, USA) as previously described elsewhere. For the treatment with sulforaphane, a subset of 6 cell lines (indicated in Table 1) were grown at ~50% confluence and treated with 5 μM sulforaphane or vehicle (DMSO, 0.01%) for 72 h and, where indicated, for 96 h, detached by trypsinization (ThermoFisher Scientific), and assessed for viability by trypan blue with a TC20 cell counter (BioRad).
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8

Prostate Cancer Cell Characterization

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Mouse prostate cancer cells RM-1 and mouse primary normal prostate basal epithelial cells were obtained from iCell Bioscience Inc. in Shanghai. All experiments involving mouse were approved by the animal center in South China University of Technology School of Medicine and the ethic number is 2018051. Inhibitor of phosphorylation of STAT3 (stattic, purity >98%) and inhibitor of TGF-β type I receptor (SB431542, IC50=94nM) were purchased form MedChemExpress company (USA). Fetal bovine serum (FBS), Dulbecco’s Modified Eagle’s Medium (DMEM)/F12 and RPMI-1640 basal medium were purchased from Gibco Company (USA). Recombinant TGF-β1 was purchased from Peprotech Company (USA). Primary antibody: anti-p63, anti-ZEB1, anti-E-cadherin, anti-vimentin, were purchased from Proteintech Company (Wuhan, China). Anti-snail, anti-N-cadherin, anti-STAT3, anti-p-STAT3 were purchased from WanLei Company (Beijing, China).
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9

Chemosensitivity and Resistance in SCLC Cells

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Human chemosensitive SCLC cell lines (H69 and H446) and chemoresistant cells (H69AR) were purchased from the American Type Culture Collection (ATCC, USA). Human chemoresistant cell line (H446DDP) was induced by continuous cisplatin treatment of H446 cells in our laboratory. All cells were cultured in RPMI1640 basal medium (Gibco, Guangzhou China) plus 10% calf serum at 37° C, in a constant temperature incubator, containing 5% CO2.
Adenosine dialdehyde (ADOX) was purchased from Selleck Chemicals (Houston, Texas, USA); ADOX is an adenosine analog that inhibits methyltransferase in cells. Cells were treated with 5 μM ADOX for 48 hours and then related experiments were performed.
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10

Generating 200-250 μm Tumor Microtissues

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HCT 116 colorectal tumor cells (ATCC®, LGC Standards GmbH, Wesel, Germany) were used for cell culture experiments. The cells were maintained in RPMI-1640 basal medium (Gibco, Fisher Scientific, Illkirch Cedex, France), supplemented with 10% fetal bovine serum (FBS, Sigma-Aldrich) and 1% penicillin/streptomycin (Life Technologies Europe B.V.). Cells were passaged at 80% confluency. To form MTs with a diameter of 200–250 μm, 70 μL of medium, containing 300 cells, were transferred into each well of an Akura™ 96-well plate (InSphero AG) and centrifuged for 2 min at 250 × g. The plate was then placed in a tilted position in an incubator to collect cells in one corner of the wells and to promote MT formation. Cells were used for further experiments after 96 h.
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