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Lentiviral shrna constructs

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Lentiviral shRNA constructs are genetic tools used for RNA interference (RNAi) studies. They contain short hairpin RNA (shRNA) sequences that target and suppress the expression of specific genes in target cells. These constructs can be transduced into cells using lentiviral vectors, allowing for stable and long-term gene knockdown.

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12 protocols using lentiviral shrna constructs

1

Lentiviral shRNA Transduction Protocol

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The lentiviral shRNA constructs were purchased from Thermo Scientific (Pittsburgh, PA, USA). Lentiviruses were produced by co-transfection of shRNA-expressing plasmid, envelope plasmid (pMD.G) and packaging plasmid (pCMV-dR8.91) in 293T cells using calcium phosphate (Invitrogen, Carlsbad, CA, USA). The 293T cells were incubated for 18 h, and the culture medium was then removed, and refreshed. The viral supernatants were harvested and tittered at 48 and 72 h post-transfection. Monolayer cells were infected with the lentiviruses in the presence of polybrene, and were further selected using puromycin.
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2

Lentivirus-based shRNA Delivery Protocol

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Lentivirus-based production and infection followed a previously published protocol [30 (link)]. Briefly, the lentiviral shRNA constructs were purchased from Thermo Fisher Scientific (Pittsburgh, PA, USA). Lentiviruses were produced by calcium phosphate transfection method (Invitrogen) and created by co-transfection of shRNA-expressing plasmids, envelope plasmids (pMD.G) and packaging plasmids (pCMV-dR8.91) in 293T cells. The transfected 293T cells were incubated in the culture medium for 18 h; the supernatant was then removed and refreshed. The supernatants containing the shRNA viruses were harvested and tittered at 72 h post-transfection. CRC cells were infected with the lentiviruses in the presence of Polybrene (8 μg/mL), and were proceeded enrich infected cell by puromycin selection (2 μg/mL).
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3

Knockdown of Endogenous Human LIF

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To knock down endogenous hLIF, lentiviral shRNA constructs were obtained from Open Biosystems (Thermo Scientific, Waltham, MA, USA). 293T cells (1.5 × 106) were subcultured in a 10 cm dish. Twenty-four hours after cell seeding, the lentiviral vector encoding hLIF shRNA (3 μg), packaging vector pCMV-VSVG (0.3 μg), and the envelop plasmid pHRCMV-8.2 ΔR (3 μg) were transfected in 293T cells using Lipofectamine 2000 (Invitrogen, Carlsbad, CA, USA). Forty-eight hours after transfection, the supernatant harboring lentiviruses was collected and filtered using a sterilized 0.45 μm syringe filter. LIF shRNA lentiviral supernatant with polybrene (5 μg/mL) was added to the Ishikawa cells. To select cells with stable integration of LIF shRNA, the viral infected Ishikawa cells were treated with 3 μg/mL puromycin for 1 week. The knockdown efficiency of the LIF shRNA was verified by western blot analysis. The best hLIF shRNA #5, among 5 hLIF shRNA clones (#3–#7), was used for subsequent experiments. The sequence of LIF shRNA #5 used for knocking down LIF was 5’-TTACCCGAGGTGTCAGGGCCG-3’.
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4

Lentiviral shRNA Transduction Protocol

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The lentiviral shRNA constructs were purchased from Thermo Scientific (Pittsburgh, PA, USA). Lentiviruses were produced via co-transfection of 293T cells with an shRNA-expressing plasmid, an envelope plasmid (pMD.G), and a packaging plasmid (pCMV-dR8.91) using calcium phosphate (Invitrogen, Carlsbad, CA, USA). The 293T cells were incubated for 18 h, followed by the replacement of the culture medium. The viral supernatants were harvested and titered at 48 and 72 h post-transfection. The cell monolayers were infected with the indicated lentivirus in the presence of polybrene and were further selected using puromycin.
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5

Lentiviral shRNA Transduction Protocol

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The lentiviral shRNA constructs were purchased from Thermo Scientific (Pittsburgh, PA, USA). The experiments were performed based on our previous protocol [37 (link)]. Briefly, lentiviruses were produced by the co-transfection of a shRNA-expressing plasmid, envelope plasmid (pMD.G) and a packaging plasmid (pCMV-dR8.91) in 293T cells using calcium phosphate (Invitrogen, Carlsbad, CA, USA). The 293T cells were incubated for 18 h, and the culture medium was then removed and refreshed. The viral supernatants were harvested and tittered at 48 and 72 h post-transfection. Monolayer cells were infected with the lentiviruses in the presence of polybrene, and were further selected using puromycin.
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6

Lentiviral Transduction and Selection

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The lentiviral shRNA constructs were purchased from Thermo Scientific (Pittsburgh, PA, USA). Lentiviruses were produced via co-transfection of 293T cells with an shRNA-expressing plasmid, an envelope plasmid (pMD.G) and a packaging plasmid (pCMV-dR8.91) using calcium phosphate (Invitrogen, Carlsbad, CA, USA). The 293T cells were incubated for 18 h, followed by replacement of the culture medium. The viral supernatants were harvested and titered at 48 and 72 h post-transfection. The cell monolayers were infected with the indicated lentivirus in the presence of polybrene and were further selected using puromycin (4 μg/mL) for 7 days. The selected stable clones were further cultured in the presence of 2 μg/mL puromycin.
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7

Lentiviral shRNA Construct Production

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The lentiviral shRNA constructs were purchased from Thermo Scientific (Pittsburgh, PA, USA). Lentiviruses were produced via co-transfection of 293T cells with an shRNA-expressing plasmid, an envelope plasmid (pMD.G) and a packaging plasmid (pCMV-dR8.91) using calcium phosphate (Invitrogen, Carlsbad, CA, USA). The 293T cells were incubated for 18 hr, followed by replacement of the culture medium. The viral supernatants were harvested and titered at 48 and 72 hr post-transfection. The cell monolayers were infected with the indicated lentivirus in the presence of polybrene and were further selected using puromycin.
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8

Lentiviral shRNA Mediated Gene Knockdown

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Lentiviral shRNA constructs were purchased from Open Biosystems. Lentiviruses were produced by cotransfecting the shRNA-expressing vector with the pMDG and p△8.91 constructs into 293T cells using a calcium phosphate transfection kit (Invitrogen). After incubation for 48–72 h, the media were collected as viral stocks. Cells (50% confluence) grown on six-well plates were incubated in fresh media containing 5 μg/mL polybrene (Santa Cruz Biotechnology, Santa Cruz, CA, USA) before infection overnight with a lentiviral viral particle-driven control or candidate gene shRNA at 2–10 multiplicity of infection (MOI). To select cells stably expressing the control or candidate gene shRNA, cells were further cultivated in the presence of puromycin (10 μg/mL) for 24 h. Cell lysates from the puromycin-resistant cells were subsequently subjected to PT-RCR analysis to confirm the efficiency of gene knockdown.
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9

CXCR3 Knockdown in Tumor Cells

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Three different lentiviral shRNA constructs were purchased from Open Biosystems. These vectors were packaged into lentivirus with the packaging vectors, pMD2, pRSV-REV, and pMDLg in HEK293T cells. Lentivirus in the supernatant of HEK293T cells were harvested and stored at −80°C. Tumor cells (4T1) were infected using the lentivirus mixture, and selected with puromycin (4 μg/ml, Invitrogen). The KD efficiency of CXCR3 in the stable infected cells was evaluated by q-PCR.
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10

Lentiviral shRNA knockdown protocol

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Lentiviral shRNA constructs were purchased from Open Biosystems. Lentiviruses were produced by cotransfecting the shRNA-expressing vector with the pMDG and p△8.91 constructs into 293T cells using a calcium phosphate transfection kit (Invitrogen). After incubation for 48-72 hours, media were collected as viral stocks. Cells (50% con uence) grown in 6-well plates were bathed in fresh media containing 5 µg/ml polybrene (Santa Cruz) before infection with a lentiviral viral particle-driven control or candidate gene shRNA at a multiplicity of infection (MOI) of 2-10 overnight. To select cells stably expressing the control or candidate gene shRNA, cells were further cultivated in the presence of puromycin (10 µg/ml) for 24 hours. Cell lystates from the puromycin-resistant cells were subsequently subjected to Western blot analysis to con rm the e ciency of gene knockdown.
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