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4 protocols using anti mouse igg dylight680

1

Western Blotting for HCN1 and HCN2 Proteins

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Western blotting was used to isolate HCN1 and HCN2 protein bands from the immunoprecipitated samples prepared above. Briefly, samples were run in a 4–15% polyacrylamide gel (Bio-Rad Laboratories, Hercules, CA). Immunoprecipitation eluates as described in the previous section were incubated at 80 °C for 10 minutes and loaded in 4–15% acrylamide gels (Bio-Rad Laboratories). After transferring proteins to a nitrocellulose membrane, the following primary Abs were used: anti-HCN1 (Antibodies Inc., #75–110) or anti-HCN2 (CST, #14957S). Analysis of signals from fluorescent secondary antibodies (anti-rabbit IgG-Dylight800 and the anti-mouse-IgG-Dylight680; Thermo Fisher Scientific) were achieved with the Odyssey CLx Imaging system (Li-Cor Biosciences, Lincoln, NE).
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2

Extracellular Vesicle Characterization Protocol

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The primary antibodies: anti-Cyclophilin A (1:1000 dilution, Abcam, ab126738), anti-CD147 (1:1000, ThermoFisher, MA1–19,201), anti-HSP70 (1:3000, Santa Cruz, sc-66,048), anti-TSG101 (1:1000 dilution, Abcam, ab125011), anti-HSP90B1 (1:1000 dilution, Cusabio, CSB-PA10887A0Rb), anti-GAPDH (1:500 dilution, EMD Millipore, MAB374), anti-Rab7 (1:1000 dilution, Cell signaling Technology, 9367), anti-Rab11 (1:250 dilution, ThermoFisher, 71–5300).
The secondary antibodies: anti-Rabbit IgG-DyLight 800 (1:10,000 dilution, ThermoFisher, SA5–35,571), anti-Mouse IgG-DyLight 680 (1:10,000 dilution, ThermoFisher, 35,519)
Reagents: Trypsin (Pierce Trypsin Protease, MS Grade, ThermoFisher, 90,057), Propidium Iodide (ThermoFisher, P1304MP), 5-(and −6)-Carboxyfluorescein Diacetate, Succinimidyl Ester, mixed isomers (5(6)-CFDA, SE) (ThermoFisher, C1157)
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3

Quantifying Cellular BDNF Protein Levels

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Protein expression was assessed by Western blotting. Cells were harvested from the culture plates and total cellular proteins were extracted by lysis buffer containing 1% Triton X-100, 1% proteasome inhibitor cocktail (Sigma-Aldrich). Lysates were cleared by centrifugation at 13,000 g for 20 min and protein concentrations were measured using the BC Assay Protein Quantitation Kit (Uptima, Oakland, CA). Total protein lysates (50 μg) were fractionated on 15% SDS-PAGE then transferred to nitrocellulose membranes (GE Healthcare Life Sciences, Vélizy-Villacoublay, France). Membranes were blocked for 1 h in PBST with 2.5% BSA, and then incubated with primary antibodies overnight at 4 °C, rabbit polyclonal anti-BDNF (sc-546, Santa Cruz [51 (link)]) at 1:200 and mouse monoclonal anti-α-tubulin (Clone DM1A, Sigma-Aldrich) at 1:10,000. Incubation with secondary antibodies conjugated to infrared fluorophores (goat anti-rabbit IgG Dylight 800 and anti-mouse IgG Dylight 680 at 1:10,000 from Thermo Scientific) was performed for 1 h. An Odyssey infrared imaging system (LI-COR, Bad Homburg, Germany) was used to scan membranes at a wavelength of 680 nm (anti-mouse) or 800 nm (anti-rabbit). Data were analyzed with Image Studio 1.1 software (Li-COR).
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4

Proteomic Analysis of TDP-43 Regulation

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Cycloheximide was obtained from Sigma-Aldrich. MG132 was obtained from Cayman Chemical. Chloroquine was obtained from Invitrogen/Thermo Scientific. Anti-C-terminal TDP43 (catalog number 12892-1-AP) and anti-phospho-TDP43 (catalog number 66318-1-Ig) were obtained from Proteintech. Anti-FLAG M2 (catalog number F1804) and Anti-FLAG M2 magnetic beads (catalog number M8823) were obtained from Sigma-Aldrich. Anti-ATE1 (catalog number sc-398805), antiactin (catalog number sc-47778), and anti-ubiquitin P4D1 (catalog number sc-8017) were obtained from Santa Cruz Biotechnology. Detection was carried out by using the following goat secondary antibodies from Thermo Scientific: anti-mouse IgG(H+L)–Alexa Fluor 488 (catalog number A-11001), anti-rabbit IgG(H+L)–Alexa Fluor 546 (catalog number A11010), anti-mouse IgG–DyLight 680 (catalog number PI35519), anti-rabbit IgG–DyLight 680 (catalog number SA5-10176), anti-mouse IgG–DyLight 800 (catalog number PI35569), and anti-rabbit IgG–DyLight 680 (catalog number SA5-10036).
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