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7 protocols using ab82968

1

Immunohistochemical Analysis of Leiomyoma Tissues

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IHC was performed to evaluate the expression of TGFBR2 and IGF2BP1 in 16 leiomyoma tissues. Tissues were fixed in formalin and embedded in paraffin, and 3-μm-thick paraffin sections were obtained. IHC was performed using an automated immunohistochemical stainer (Ventana Medical Systems, Inc., Tucson, AZ, USA) according to the manufacturer’s protocol. The sections were deparaffinized and pretreated with a cell-conditioning solution (CC1, Ventana), followed by UV irradiation to abrogate the endogenous hydroperoxidase activity. The primary antibodies were diluted in Dako antibody diluent (Dako Cytomation, Glostrup, Denmark) with background-reducing components and used under the following dilutions: TGFBR2 (1:100, ab61213, Abcam, Franklin Lakes, NJ, USA) and IGF2BP1 (1:100, ab82968, Abcam,). The sections were incubated with primary antibodies at room temperature for 32 min, and hybridized with HRP-conjugated secondary antibody (Ventana) for 8 min. The reaction was developed with diaminobenzidine (DAB; Dako) for 5 min and the slides were counterstained with hematoxylin II (Ventana) for 4 min and bluing reagent (Ventana) for 4 min. The sections were observed under light microscope (BX50, Olympus, Japan).
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2

Immunohistochemical Analysis of Dental Tissues

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For immunohistochemical staining, deciduous and permanent teeth were fixed in 10% buffered formalin for 1 day, decalcified with 10% EDTA (pH 7.4; Fisher Scientific, TX, USA) for 8 weeks, embedded in paraffin, and then sectioned at a thickness of 3 µm. Specimens were subjected to IHC staining with antihuman IGF2BP1 (Ab82968, Abcam, Cambridge, UK; rabbit polyclonal, diluted 1∶100), antihuman CALB1 (Ab25085, Abcam; rabbit polyclonal, diluted 1∶400), LGR5 (Ab75732, Abcam; rabbit polyclonal, diluted 1∶50), and gamma-aminobutyric acid (GABA) A receptor, beta 1 (GABRB1; Ab51123, Abcam; rabbit polyclonal, diluted 1∶200). Endogenous peroxidase activity was quenched by the addition of 3% hydrogen peroxide. Sections were incubated in 5% bovine serum albumin to block nonspecific binding. The primary antibodies were diluted to give optimal staining and the sections were incubated overnight. After incubation, EnVision + System-HRP Labeled Polymer Anti-rabbit (K4003, Dako North America, CA, USA; ready to use) was applied for 20 min. Color development was performed using 3,3′-diaminobenzidine substrate (Dako) and counterstained with Gill's hematoxylin solution (Merck, Darmstadt, Bermany). Negative control sections were treated in the same manner but without primary antibodies.
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3

Western Blot for Epithelial-Mesenchymal Transition

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Total cellular protein samples were separated with 10% SDS PAGE and transferred electrophoretically onto PVDF membranes (Millipore, Billerica, MA, USA). Primary antibodies against E-cadherin (ab40772), N-cadherin (ab76057), Vimentin (ab8978, Abcam), IGF2BP1 (ab82968, Abcam), YY1 (ab109228, Abcam), CDK4 (ab199728, Abcam), cyclin D1 (ab16663, Abcam), CDK2 (ab32147, Abcam) and GAPDH (ab9485, Abcam), along with HRP-conjugated secondary antibody were obtained and employed. GAPDH served as internal control.
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4

Immunohistochemical Analysis of IGF2BP1 in CRC

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Immunohistochemistry was performed to examine the expression pattern of IGF2BP1 protein in colorectal cancer specimens. For tissue microarray, the procedures followed our previous methods and manufacturer’s instructions [42 (link),43 (link)]. The antibody used in the study was a polyclonal antibody against human IGF2BP1 (1:100, Ab82968, Abcam, Cambridge, UK). Bound antibodies were visualized using the Envision Detection System (K500711; Dako Denmark A/S), and DAB (diaminobenzidine) was used as a chromogen. The histology score (H-score) is defined as the percentage of IGF2BP1 immunoreactivity region (0 to 100) multiplied byhe intensity of IGF2BP1 expression (0, 1, 2, and 3). A H-score of more than 100 was considered as strong IGF2BP1 immunoreactivity. The assessment of H-scores was performed by a specialist colorectal medical oncologist who was blinded to clinical information.
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5

Western Blot Analysis of Autophagy Markers

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Radioimmunoprecipitation assay buffer (RIPA) was applied to lyse cells. Total proteins were then harvested and quantified with bicinchoninic acid assays (Beyotime, Shanghai, China). The target proteins were separated through 10% SDS-PAGE and transferred to polyvinylidene fluoride membranes (Merck Millipore, Burlington, MA, USA). The membranes were blocked with nonfat milk, incubated with primary antibodies, and then incubated with secondary antibody diluted at a ratio of 1:10,000 (Jackson ImmunoResearch, West Grove, PA, USA). The primary antibodies were anti-LC3B (2775, Cell Signaling Technology, Beverly, MA, USA), anti-p62 (88588, Cell Signaling Technology), anti-HuR (ab28660, Abcam, Cambridge, MA, USA), anti-SFRS1 (ab133689), anti-FMRP (ab17722), anti-ALKBH5 (ab195377), anti-IGF2BP1 (ab82968), anti-LIN28A (ab46020), anti-FTH1 (ab65080), anti-NCOA4 (ab86707), anti-BCL-2 (ab32124), anti-BECN1 (ab62557), and anti-GAPDH (ab9485). The protein signals were visualized with enhanced chemiluminescence detection reagents (ECL, Millipore, Burlington, MA, USA) and quantified with Image Lab software (Bio-Rad, Hercules, CA, USA).
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Western Blot Analysis of Protein Markers

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Proteins from cells and tissues were collected using radioimmunoprecipitation assay lysis buffer (Thermo Fisher Scientific) and analyzed for protein concentration using the bicinchoninic acid protein assay kit (Pierce, USA). Then, proteins (30 μg) were electrophoresed on sodium dodecyl sulfate polyacrylamide gel, electroblotted onto polyvinylidene fluoride membranes, and blocked with 5% nonfat milk for 2 h in tris-buffered saline Tween-20. Primary antibodies against CANX (1:1000, ab22595, Abcam), insulin-like growth factor 2 mRNA-binding protein 1 (IGF2BP1, 1:1000, ab82968, Abcam), Vascular endothelial growth factor (VEGF, 1:1000, sc-7269, Santa Cruz Biotechnology), programmed death-ligand 1 (PD-L1, 1:1000, 13684, Cell Signaling Technology), and GAPDH (1:1000; ab37168, Abcam) were incubated with the membrane at 4°C overnight, and horseradish peroxidase-linked secondary antibody (1:500; SC-2054; Santa Cruz Biotechnology) was added for 2 h at room temperature. Protein bands were visualized using an enhanced chemiluminescence detection kit (Millipore) 29 (link).
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7

Western Blot Analysis of Protein Expression

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Cell lysates were obtained using radioimmunoprecipitation assay lysis buffer (Beyotime, Shanghai, China) and measured via a bicinchoninic acid Protein Assay Kit (Beyotime). Approximately 20 µg of lysate was loaded per well on 10% sodium dodecyl sulfate–polyacrylamide gel electrophoresis gels followed by electronic transfer onto polyvinylidene fluoride membranes (Millipore), and 5% fat-free milk was used for blocking followed an overnight incubation at 4 ℃ with primary antibodies against METTL3 (ab195352; Abcam), METTL14 (ab220030; Abcam), WTAP (ab195380; Abcam), CD9 (ab223052; Abcam), CD63 (ab216130; Abcam), TSG101 (ab125011; Abcam), NLRP3 (ab263899; Abcam), caspase-1 (ab207802; Abcam), gasdermin-N domain (GSDMD-N; ab215203; Abcam), IGF2BP1 (ab82968; Abcam), IGF2BP2 (ab129071; Abcam), IGF2BP3 (ab177477; Abcam), and GAPDH (#5174, Cell Signaling Technology, Danvers, MA, USA). After antibody labeling, membranes were washed with Tris-Buffered Saline Tween-20 thrice times in total. Membranes were then hybridized with horseradish peroxidase-conjugated secondary antibodies (A0208, A0216; Beyotime). Protein was identified using an Enhanced Chemiluminescence Detection kit (Pierce Biotechnology, Rockford, IL, USA) and band illumination was quantified using Image-Pro Plus 6.0 software. GAPDH was used as a loading control.
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