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Anti ha monoclonal antibody

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The Anti-HA monoclonal antibody is a laboratory reagent used to detect and identify proteins that have been tagged with the HA epitope. This antibody specifically binds to the HA tag, which is a short amino acid sequence derived from the hemagglutinin protein of the influenza virus. The Anti-HA antibody can be used in various experimental techniques, such as Western blotting, immunoprecipitation, and immunofluorescence, to help researchers study the expression, localization, and interactions of HA-tagged proteins.

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10 protocols using anti ha monoclonal antibody

1

CRISPR-Cas9 Nucleofection in K562 and Jurkat Cells

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RNP nucleofection was performed with 2 × 105 K562 or Jurkat cells using Lonza 4D nucleofector (Lonza) following the machine’s pre-set K562 and Jurkat transfection programs [22 (link)]. Briefly, Cas9 proteins and sgRNA were pre-assembled at indicated concentrations at room temperature for 10 min, mixed with suspended cells and then subjected to electroporation according to manufacturer’s instructions. Unless noted otherwise, cells were harvested at 48 h post nucleofection and subjected to T7E1 assay using T7E1 endonuclease (NEB) as described [22 (link)]. For sequence analysis, CRISPR-Cas9 target sites were PCR amplified, cloned into pEASY-Blunt-Zero Cloning Kit (Beijing TransGen Biotech, Beijing, China) and then sequenced with M13 primer.
For detection of nucleus localized Cas9 proteins, 2 × 106 of K562 cells were nucleofected with 100 μg Cas9 proteins and then harvested at indicated time points. Collected cells were fractionated using nuclear and cytoplasmic extraction kit (Beyotime Biotechnology, Shanghai, China) for western blot (WB) analysis. Cas9 proteins were detected using monoclonal anti-HA antibody (Cell Signaling Technology, Danvers, MA, USA, 2999) at 1:5000 dilutions. Nuclear internal control lamin B1 was detected using anti-Lamin B1 antibody (Cell Signaling Technology, 13435S) at 1:5000 dilutions.
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2

Immunoprecipitation and Western Blot Analysis

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Protein extraction from cell samples was performed in NP‐40 lysis buffer (P0013F, Beyotime) with protease and phosphatase inhibitors. The extracts were preincubated for 30 min on ice. Proteins were immunoprecipitated using either a monoclonal anti‐HA antibody (1:1000, Cat# 2367, Cell Signaling Technology) or monoclonal anti‐FLAG antibody (1:1000, Cat# 8146, Cell Signaling Technology) at 4 °C overnight. Immunoprecipitated proteins were purified using Pierce protein A/G beads (Cat# 88802, Thermo Fisher Scientific) at room temperature for 0.5 h. Finally, the proteins were eluted using NP‐40. Immunoprecipitated proteins were analyzed by western blotting using either a monoclonal anti‐FLAG antibody or monoclonal anti‐HA antibody.
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3

Protein Expression Analysis by Western Blot

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Samples were separated by 10% SDS-polyacrylamide gel electrophoresis, followed by transfer to PVDF membrane. After blocking in phosphate-buffered saline containing 5% bovine serum albumin and 0.1% Tween-20, the membrane was incubated with anti-myc monoclonal antibody (Cell Signaling Technology Inc.), anti-HA monoclonal antibody (Cell Signaling Technology Inc.), anti-Cyclin D1 monoclonal antibody (Santa Cruz Inc.), anti-PPIL3 polyclonal antibody (Abcam) or anti-β-actin monoclonal antibody (Sigma) at room temperature for 2 h, followed by incubation with a peroxidase-linked secondary antibody (CalbioChem) at room temperature for one h. The signals were detected using Western blotting Luminol Reagent (Santa Cruz Inc.).
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4

Chromatin Immunoprecipitation of Calmodulin

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ChIP assay was performed according to Strenkert et al. 201140 (link). An anti-HA mono-clonal antibody (Cell Signaling Technology) was used to pull down CMD1-HA, with a mouse IgG used as a negative control. The pull-down complex was eluted and subjected to quantitative RT-PCR. Signals for individual genomic regions from anti-HA pulldown samples were normalized against IgG control samples and then to the corresponding signals of cmd1 cells lacking CMD1-HA, which was set to 1. Primers used were as follows: F1: 5ʹ-TGTGTTTCCGACTTTGCCAG-3ʹ, R1: 5ʹ-GACACGACATCACACGACAG-3ʹ; F2: 5ʹ-CACTCCTCCCTCTCCTTGC-3ʹ, R2: 5ʹ-GAAGAAGAGGCGGTGGAGAG-3ʹ; F3: 5ʹ-GGTTGCAACACCCTAACGTT-3ʹ, R3: 5ʹ-CCCATGAAACCAAGCACCAA-3ʹ; F4: 5ʹ-CATACGGGGTCCCTACACTC-3ʹ, R4: 5ʹ-TGTCCAGTGAGAAGTAGCCG-3ʹ.
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5

Visualizing GLUT4 Trafficking in Podocytes

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The constructions of the GLUT4 carrying an HA epitope in the extracellular loop (HA-GLUT4) or EGFP-tagged-GLUT4 (GLUT4-EGFP) were generated as described previously [9 (link), 10 (link)]. To detect cell-surface GLUT4, cells were plated in 6-well slides followed by different interventions. After 24 h of transfection, the cells were serum-starved for 2 h and then either treated or untreated with 100 nM insulin (Solarbio, China) for 30 min. After fixation with 4% paraformaldehyde, the cells were blocked with 5% BSA for 30 min at room temperature and incubated with anti-HA monoclonal antibody (1:1000, Cell Signaling Technology, USA) overnight at 4 °C, then washed three times and surface-bound monoclonal antibody detected using Alexa Fluor® 488-conjugated goat anti-rabbit IgG (1:200, Abcam, USA). Images were collected using a fluorescence microscope (Leica, Germany) and the mean fluorescence intensity was analyzed using ImageJ/Fiji software (N.I.H., Bethesda, MD). For co-localization assay, podocytes were co-transfected with exogenously expressed RAB3B-mCherry and GLUT4-EGFP. After washing with PBS and fixation with 4% paraformaldehyde, the cells were incubated with DAPI, and observed with a fluorescence microscope. Pearson’s correlation coefficient between RAB3B and GLUT4 was computed using the colocalization Finder of the ImageJ/Fiji software (N.I.H., Bethesda, MD).
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6

Immunohistochemical Analysis of GALT Liver Tissue

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The test and negative control slides used here were prepared as described in Daenzer et al [7 (link)]. Specifically, test slides included 5 micron sections of fixed liver tissue derived from GALT-null rats that had been administered an scAAV9-HA.hGALT vector either 14 or 30 days prior to euthanasia. Negative control slides included 5-micron sections of fixed liver tissue from GALT-null rats that had been administered vehicle alone (phosphate-buffered saline, PBS). The individual rats whose samples are presented here include: Rat A (FKRC311.6), Rat B (FKRC297.2), Rat C (FKRC297.12), Rat D (FKRC297.10) and Rat E (FKRC297.9).
Immunohistochemistry (IHC) was performed using an anti-HA monoclonal antibody (Cell Signaling Technology #3724) as primary at 1:1000 dilution, and a peroxidase-coupled goat anti-rabbit IgG (H+L) (Vector Labs PI-1000-1) as secondary. Antibody binding was visualized as brown color by reaction of the coupled peroxidase with 3,3′-diaminobenzidine (DAB; Vector Labs, SK-4100), as recommended by the manufacturer. All slides were also treated with hematoxylin which nonspecifically stained all cells a light blue color. Mounted slides were scanned on a Hamamatsu Nanozoomer 2.0 HT whole slide scanner at 40X and viewed using the free Hamamatsu software (NDP viewer).
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7

Immunoblotting of LHCSR3 and HA-tagged Proteins

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Cells were harvested by centrifugation at 12,000 × g for 30 s, and resuspended in 60 μl of SBA buffer (100 mM DTT, 100 mM Na2CO3), with 40 μl of SBB buffer (30% sucrose, 5% SDS). The samples were vortex for 20 min at room temperature and then subjected to 3 freeze/thaw cycles. After centrifugation, the supernatants were loaded on a 10%−12.5% SDS-PAGE gel and the proteins were blotted onto a nitrocellulose membrane. Membranes were blocked for 0.5 h with 5% milk in TBST and then incubated with anti-LHCSR3 polyclonal antibody (Agrisera), diluted 1:10,000 in TBST or anti-HA mono-clonal antibody (Cell Signaling Technology), diluted 1:1,000, anti-α-Tubulin mono-clonal antibody (Sigma) diluted 1:1,000 for one hour and then rinsed three times for 5 min before incubation with peroxidase-conjugated affinipure goat anti-rabbit IgG (Jackson) or peroxidase-conjugated affinipure goat anti-mouse IgG (Jackson) both diluted 1:10,000 for 1 hour. The blots were developed with ECL detection reagent (Millipore) and images of the blots were obtained using a CCD imager (Thermo).
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8

Co-immunoprecipitation Assay in Rice Protoplasts

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The Co‐IP assays were performed as reported earlier (Cho et al., 2016; Yoon et al., 2017). Briefly, fusion molecules were co‐expressed in rice Oc cell protoplasts. Afterwards, fusion proteins were extracted in IP buffer [75 mm NaCl, 50 mm Tris‐HCl (pH 7.5), 5 mm EDTA, 1% Triton X‐100, 1 mm dithiothreitol, 1 mm phenylmethanesulfonylfluoride, 2 mm NaF, 20 μm MG132, and an appropriate amount of Protease inhibitor cocktail (Roche)]. Expressed proteins were immuno‐precipitated with anti‐HA mouse monoclonal antibodies (12CA5; Roche, Mannheim, Germany, http://www.roche.com) conjugated with A and G agarose beads (Millipore, Billerica, MA, USA, http://www.emdmillipore.com). For protein detection, we used horseradish peroxidase (HRP)‐conjugated anti‐Myc monoclonal antibody (#2040; Cell Signaling) and anti‐HA monoclonal antibody (#2999; Cell Signaling).
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9

Co-immunoprecipitation Assay in Rice Protoplasts

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Co‐IP assays were performed as previously described (Cho et al., 2016 (link); Yoon et al., 2017 (link)). Briefly, fusion proteins were co‐expressed in rice Oc cell protoplasts then total proteins extracted in IP buffer [75 mm NaCl, 50 mm Tris‐HCl (pH 7.5), 5 mm EDTA, 1% Triton X‐100, 1 mm dithiothreitol, 1 mm phenylmethanesulfonyl fluoride, 2 mm NaF, 20 µm MG132, protease inhibitor cocktail (Roche)]. Expressed proteins were immunoprecipitated using anti‐HA mouse monoclonal antibodies (12CA5; Roche) or anti‐Myc mouse monoclonal antibodies (#2276; Cell Signaling) conjugated with A and G agarose beads (Millipore, Billerica, MA, http://www.emdmillipore.com). For protein detection, horseradish peroxidase (HRP)‐conjugated anti‐HA monoclonal antibody (#2999; Cell Signaling) or anti‐Myc monoclonal antibody (#2040; Cell Signaling) were used.
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10

Reagents for Protein Purification and Analysis

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ATP, Mops, HEPES, Tris, MgCl2, MnCl2, NaCl, EDTA, Brij 35, glycerol, acetic acid, lysozyme, DNAse, RNAse, Phenix imaging film, BSA, Ni-resin and liquid scintillant were obtained from Fisher Scientific. γ-32P-ATP was obtained from NEN Products. SRPIN340 was obtained from Sigma. FuGene reagent was obtained from Promeg and Lipofectamine 2000 was obtained from ThermoFisher. Protease inhibitor cocktail, EGF, and TG003 were obtained from Roche. Anti-SRPK1 monoclonal antibody was purchased from BD Biosciences. Anti-CLK1 polyclonal antibody was purchased from Aviva. Anti-SRSF1 monoclonal antibody was purchased from Life Tech. Anti-GFP monoclonal antibody, anti-HA monoclonal antibody, anti-His monoclonal antibody and Protein G beads were purchased from Cell Signaling. Anti-GST monoclonal antibody was purchased from BioLegend. InstantBlue was purchased from Expedeon.
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