The largest database of trusted experimental protocols

Nusieve gtg agarose

Manufactured by Cambrex
Sourced in United States

Nusieve GTG Agarose is a high-resolution agarose gel for DNA separation and analysis. It is designed to provide effective separation of DNA fragments, enabling accurate size determination and visualization.

Automatically generated - may contain errors

2 protocols using nusieve gtg agarose

1

Cloning and Sequencing PCR Products

Check if the same lab product or an alternative is used in the 5 most similar protocols
PCR products were either directly cloned or first separated on a 1% low melting gel (Nusieve GTG Agarose, Cambrex, Rockland, USA) excised and cloned with Topo TA Cloning kit (Life Technologies Europe B.V. (Invitrogen), Zug, Switzerland) according to manufacturer’s instruction. After transformation into One Shot Top 10 chemically competent E. coli (Life Technologies Europe B.V. (Invitrogen), Zug, Switzerland) bacteria were grown on a LB-amp-X-Gal plate overnight at 37°C. Four to ten colonies were picked and grown overnight at 37°C in LB medium supplemented with 100 μg ampicillin/ml (Ampicillin-sodium salt, Carl Roth GMBH, Karlsruhe, Germany).
Plasmid DNA purification was performed with the QuickLyse Miniprep Kit (Qiagen AG, Hombrechtikon, Switzerland). The sequencing was done by Microsynth (Balgach, Switzerland). Sequences were edited and analyzed with the following software: DNASTAR software (version 5), clone manager, ClustalX 2.0.3. Phylogenetic trees were constructed with Mega (version 5.1) software
[30 (link)]. Sequence data were submitted to GenBank and were assigned the accession numbers [GenBank: KF990530 to GenBank: KF990540].
+ Open protocol
+ Expand
2

Quantitative RNA Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNAs were extracted in mice livers according to the manual specification using a TRI reagent RNA extraction kit (Fluka, Buchs, Switzerland). The concentration of total RNAs was measured by nano-drop spectrophotometry. RT-PCR analysis was performed for Tn-C and Fibronectin mRNA. Each sample was reverse-transcribed to cDNA for 1 hr at 42°C using a cDNA synthesis kit (Promega, Madison, WI, USA). PCR was done using the following primers: Tn-C ((Forward primer:5'-ATCGT-TACCGCCTCAACTACA-3'; Reverse primer: 5'-TGT-TCCATCCACAGTCACCA-3') [321 bp]); Fibronectin (sense sequence, 5-CAA TGC CCT TCC TGT TCT GC-3; anti-sense sequence, 5-GTG GAC GGC GTA GGC TTC TT-3 [452 bp]); and glyceraldehyde-3-phosphate dehydrogenase (GAPDH; sense sequence, 5-GTG GAT ATT GTT GCC ATC AAT GAC C -3; anti-sense sequence, 5-GCC CCA GCC TTC TTC ATG GTG GT -3 [270 bp]); all purchased from Bioneer (Daejeon, Korea).
The GAPDH was used to verify that equal amounts of RNA were used for reverse transcription and PCR amplification from different experimental conditions. Products were electrophoresed on a 2.0% NuSieve GTG-agarose (Cambrex Bio Science, Rockland, ME, USA) gel and visualized by staining with Safeview nucleic acid (Applied Biological Materials Inc, Vancouver, BC, Canada). The gels were certified using a Molecular Imager ChemiDoc XRS+ (Bio-Rad).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!