PCR products were either directly cloned or first separated on a 1% low melting gel (
Nusieve GTG Agarose, Cambrex, Rockland, USA) excised and cloned with
Topo TA Cloning kit (Life Technologies Europe B.V. (Invitrogen), Zug, Switzerland) according to manufacturer’s instruction. After transformation into
One Shot Top 10 chemically competent E. coli (Life Technologies Europe B.V. (Invitrogen), Zug, Switzerland) bacteria were grown on a LB-amp-X-Gal plate overnight at 37°C. Four to ten colonies were picked and grown overnight at 37°C in LB medium supplemented with 100 μg ampicillin/ml (
Ampicillin-sodium salt, Carl Roth GMBH, Karlsruhe, Germany).
Plasmid DNA purification was performed with the
QuickLyse Miniprep Kit (Qiagen AG, Hombrechtikon, Switzerland). The sequencing was done by Microsynth (Balgach, Switzerland). Sequences were edited and analyzed with the following software: DNASTAR software (version 5), clone manager, ClustalX 2.0.3. Phylogenetic trees were constructed with Mega (version 5.1) software
[30 (
link)]. Sequence data were submitted to GenBank and were assigned the accession numbers [GenBank: KF990530 to GenBank: KF990540].
Deubelbeiss M., Blatti-Cardinaux L., Zahno M.L., Zanoni R., Vogt H.R., Posthaus H, & Bertoni G. (2014). Characterization of small ruminant lentivirus A4 subtype isolates and assessment of their pathogenic potential in naturally infected goats. Virology Journal, 11, 65.