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4 protocols using las advanced fluorescence software

1

Immunofluorescent Staining of Sorted Lung B Cells

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Sorted B cells (2 ×105) from lung tissue were suspended in 200 μL of 1X PBS with 2.5% FCS. The sorted cell suspensions were loaded into a Shandon Cytospin 4 (Thermo Electron Corporation, Waltham, MA), spun at 800–1000 rpm for 5 min and stored at −80°C. Frozen cytospin slides were thawed at room temperature for 30 min, fixed in 4% PFA for 15 min, and stained with an AlexaFluor488-conjugated Ab specific to RELMα (Bioss Inc., Woburn, MA). Coverslips were applied to the slides using Vectashield mounting medium (Vector Laboratories, Burlingame, CA) with DAPI. Images were taken using a Leica DM6000B fluorescent microscope, Orca Flash 4.0 mounted digital camera (Hamamatsu Photonics K.K., Japan) and LAS Advanced Fluorescence software (Leica Microsystems, Buffalo Grove, IL). Fluorescent channels were photographed separately and then merged. Exposure times and fluorescence intensities were normalized to appropriate control images.
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2

Immunofluorescent Staining of Sorted Lung B Cells

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Sorted B cells (2 ×105) from lung tissue were suspended in 200 μL of 1X PBS with 2.5% FCS. The sorted cell suspensions were loaded into a Shandon Cytospin 4 (Thermo Electron Corporation, Waltham, MA), spun at 800–1000 rpm for 5 min and stored at −80°C. Frozen cytospin slides were thawed at room temperature for 30 min, fixed in 4% PFA for 15 min, and stained with an AlexaFluor488-conjugated Ab specific to RELMα (Bioss Inc., Woburn, MA). Coverslips were applied to the slides using Vectashield mounting medium (Vector Laboratories, Burlingame, CA) with DAPI. Images were taken using a Leica DM6000B fluorescent microscope, Orca Flash 4.0 mounted digital camera (Hamamatsu Photonics K.K., Japan) and LAS Advanced Fluorescence software (Leica Microsystems, Buffalo Grove, IL). Fluorescent channels were photographed separately and then merged. Exposure times and fluorescence intensities were normalized to appropriate control images.
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3

Immunofluorescence Staining of YAP1, TAZ, and Tubulin

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Cells were fixed in 4% paraformaldehyde for 15 min and blocked by 5% bovine serum albumin in PBS-T (PBS with 0.1% Triton X-100) for 1 h at room temperature. Cells were treated with mouse anti-YAP1 monoclonal antibody (1:100 dilution, Abnova clone 2F12, Cat. No. H00010413-M01), anti-TAZ monoclonal antibody (1:100 dilution, BD pharmingen clone M2-616, Cat. No. 560235) and rabbit anti-tubulin polyclonal antibody (1:100 dilution, Santa Cruz clone H-300, Cat. No. sc-5546) diluted with 1% bovine serum albumin in PBS-T at 4 °C overnight, followed by Alexa 488-conjugated rabbit anti-mouse secondary antibody (1:500 dilution, Invitrogen, Cat. No. A11059), Cy3-conjugated donkey anti-mouse secondary antibody (1:500, Jackson Immunoresearch, Cat. No. 715-165-151) or Alexa 488-conjugated goat anti-rabbit secondary antibody (Cat. No. A11008). For F-actin, Alexa Fluor 594 Phalloidin (1:50 dilution, ThermoFisher, Cat. No. A12381) was used. Counterstaining for each condition was performed with Draq5 (Invitrogen). Images were captured by a Leica TCS SP5 confocal microscope with a Leica 63X oil objective lens (NA 1.4) and analysed with LAS Advanced Fluorescence software (Leica).
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4

Immunocytochemistry of Activated FAK in MSCs

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MSCs were fixed on microfluidics channels in 4% paraformaldehyde for 15 min, washed with PBS, and stored overnight at 4 °C. Slides were permitted to come to room temperature the next morning, sticky channel overlays removed by single edge razor blade, and cells permeabilized in PBS with 0.2% Triton X-100 for 5 min at room temperature. Cells were incubated with Image-iT FX signal enhancer (Thermo Fisher, I36933) for 30 min at room temperature. Rabbit anti-pFAK polyclonal antibody (1:100 dilution, anti-pFAK Y397, Cell Signaling 3283S) was applied for labeling activated FAK for 1 h at room temperature in 2.5% BSA-0.1% Triton X-PBS. Slides were then washed with PBS. Cells were incubated with a 1:1000 dilution of goat anti-rabbit IgG Alexa Fluor 488 secondary antibody (Invitrogen, Cat. No. A11008) for 1 h and washed in PBS. Cells were subsequently incubated with 25 µM DRAQ5 for 30 min at room temperature. Coverslips were mounted with Prolong Gold (Invitrogen). Images were captured by a Leica TCS SP5 confocal microscope with a Leica 63 × oil objective lens (NA 1.4) and analyzed with LAS Advanced Fluorescence software (Leica) and ImageJ 1.50i (NIH) to measure fluorescence intensity of the green channel.
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