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5 protocols using ultimate 3000 chromatograph

1

HPLC Analysis of Polyphenolic Compounds

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The chromatographic separation was done by a modified method of Delgado et al. [39 (link)]. The chromatographic separation was carried out using isocratic mobile phase methanol–acetic acid-water (52:2:46) as a solvent with a flow rate of 1.0 mL/min. The HPLC column was equipped with a C18-type reversed-phase column (5 μm, 4.6 × 250 mm, Acclaim™ 120, Thermo Fischer Scientific, USA) and the analyses were carried out by using an UltiMate 3000 Chromatograph (Thermo Scientific, USA). The dried samples were dissolved in methanol–water (1:1), filtered and aliquots of 25 µL were injected into the HPLC system. The detection of trans-resveratrol, quercetin, vanillic acid, and gallic acid was established at 280, 257, 304, and 368 nm, respectively. Triplicate injections were performed, and average peak areas emission wavelengths were used for the quantitation. For each compound, readings were done at their maximum absorbance wavelength.
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2

HPLC-MS Analysis of Natural Compounds

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HPLC analysis and fractionation were performed with the Vanquish Flex UHPLC System using the Diode Array Detector (Thermo Fisher Scientific, Waltham, MA, USA), equipped with Luna® 5 µm C18(2) 100 Å, 250 × 4.6 mm column (Phenomenex, Torrance, CA, USA).
Mass spectra were collected using maXis II 4G ETD mass spectrometer (Bruker Daltonics, Bremen, Germany) and UltiMate 3000 chromatograph (Thermo Fisher Scientific, Waltham, MA, USA), equipped with Acclaim RSLC 120 C18 2.2 µm 2.1 × 100 mm column (Thermo Fisher Scientific, Waltham, MA, USA). Spectrum registration mode: ESI ionization mode, full scan from 100–1500 m/z, MS/MS with selection of the three most intense ions, dissociation type: CID 10–40 eV, nitrogen collision gas. Mass spectra were processed using OpenChrom Lablicate Edition (1.4.0.202201211106), TOPPView v. 2.6.0 [58 (link)]. The chemical structures were identified using the GNPS [59 (link)], NPAtlas [60 (link),61 (link)] and Dictionary of Natural Products 31.1 (https://dnp.chemnetbase.com (accessed on 10 March 2022)) [38 (link)] databases.
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3

Proteomic Analysis of Biological Samples

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Acetonitrile (ACN) and methanol were purchased from Merck Company (Germany); glacial acetic acid, from Damao Chemical Reagent Factory in Tianjin; and bovine serum albumin (BSA), from Sigma-Aldrich Company (USA). Trypsin (bovine pancreas), formic acid, trifluoroacetic acid, urea, protease inhibitor cocktail, dithiothreitol, trichloroacetic acid, acetone, and iodoacetamide were purchased from Sigma–Aldrich (St. Louis, MO, USA). All experimental water was purified by a Milli-Q system (Millipore Corporation, USA). A Thermo SEC120 HPLC column (5 μm, 120 Å) was used. An Ultimate 3000 chromatograph and Thermo LTQ-Orbitrap mass spectrometer were used for detection.
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4

Determining Hyaluronan Molecular Weights

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Average molecular weights of the HA fractions were determined by HP-SEC using Ultrahydrogel 250 column (300 × 7.8 mm, 6 µm, pore size 250 Å; Waters, Milford, MA, USA). The mobile phase was 0.1 M Tris-HCl, pH 8.9 (1 mL/min). We used an Ultimate 3000 chromatograph (Dionex, Sunnyvale, CA, USA) equipped with a vacuum degasser, LPG-3400SD pump, column thermostat TCC-3000SD, and a spectrophotometric detector DAD-3000 operating at 240 nm. The molecular weights of the fractions were estimated by comparison with the retention times of polystyrene sulfonate standards (PSS Polymer Standards Service GmbH, Mainz, Germany).
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5

Purification and Characterization of Bioactive Peptides

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The dry powder of the hydrolysate was dissolved in ultrapure water at a concentration of 100 mg/mL, centrifuged at room temperature for 5 min at 20,000× g, and passed through a 0.45 μm filter. Gel filtration was performed in ultrapure water on a HiLoad 16/600 Superdex® 30 pg column (GE Healthcare, Chicago, IL, USA) at a 0.3 mL/min flow rate. Then, 1 mL of the hydrolysate solution was loaded on the column at a specific time point. Collected fractions (1.5 mL) were subjected individually to measure absorbance at 220 nm and 280 nm on a NanoDrop 2000 spectrophotometer (Thermo Fisher Scientific, Waltham, MA, USA), and independently, to estimate the antioxidant activity. The most active fraction was lyophilised, dissolved in 0.1% (v/v) trifluoroacetic acid (TFA), and subjected to reverse-phase high pressure liquid chromatography (RP-HPLC) using an UltiMate 3000 chromatograph (Dionex™/Thermo™, Sunnyvale, CA, USA). The separation was performed on a Discovery C18 250 × 4.6 mm column (Sigma-Aldrich, Poznan, Poland) at a 1 mL/min flow rate by means of two buffers: (A) 0.1% TFA (v/v) and (B) 0.07% TFA in 80% acetonitrile (both v/v). The linear gradient from 0% to 60% of buffer B was set up in 15 min, while the spectrophotometric detection was carried out at 220 nm and 280 nm. The collected fractions were evaporated in a vacuum centrifuge and redissolved in ultrapure water.
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