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24 protocols using ab32505

1

Western Blot Analysis of FIGF, AKT, and LYVE-1

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Cells were harvested in the presence of a protease inhibitor cocktail (Sigma-Aldrich) in RIPA lysis buffer (Beyotime, Jiangsu, China). Equal amounts of proteins from the cells were resolved on SDS-PAGE and then transferred onto PVDF membranes as previously described (6 (link)). The membranes were separately probed with rabbit anti-FIGF (1:1,000, PAB4879; Abnova, Atlanta, GA, USA), rabbit anti-AKT1 (1:1,000, ab32505), rabbit anti-pAKT1 (s473) (1:1,000, ab66138; both from Abcam, Cambridge MA, USA), rabbit anti-mouse LYVE-1 (1:1,000, ab36993; AngioΒio, San Diego, CA, USA), rabbit anti-GAPDH (1:500; Sigma-Aldrich) for 1 h. Subsequently, the membranes were washed with TBST, and then incubated with goat anti-rabbit HRP (1:500; Sigma-Aldrich) for 1 h. Bound antibody chemiluminescence was detected using chemiluminescence kits (Thermo Fisher Scientific, Darmstadt, Germany). The optical density was determined using a scanning densitometer and analyzed using Quantity One software (Bio-Rad, Hercules, CA, USA).
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2

Western Blot Analysis of Signaling Proteins

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Cells were directly lysed in 2× SDS loading buffer and boiled for 15 min. Proteins were separated by SDS–PAGE, transferred to PVDF membrane, and probed with antibodies specific for, p-AKT (1:2000 dilution, s473, 4060, Cell Signaling Technology), AKT (1:2000 dilution, ab32505, Abcam), p-p53 (1:2000 dilution, s15, 9284, Cell Signaling Technology), p-JNK (1:2000 dilution, 9251, Cell Signaling Technology), JNK (1:2000 dilution, 9252, Cell Signaling Technology), c-Myc (1:2000 dilution, ab32072, Abcam), p53 (1:1000 dilution, sc-126, Santa Cruz), and Flag (1:5000 dilution, F1804, Sigma), mTOR (1:2000 dilution, 2983, Cell Signaling Technology), Rictor (1:2000 dilution, 2114, Cell Signaling Technology), TBK1 (1:2000 dilution, 3504, Cell Signaling Technology), IKBKE (1:2000 dilution, 3416, Cell Signaling Technology). β-Actin (1:5000 dilution, 66009-1-Ig, Proteintech) antibody was used as a loading control. Samples derived from the same experiment and gels/blots were processed in parallel.
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3

Immunofluorescence Imaging and Western Blotting

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Cells grown overnight on coverslips were fixed in 4% paraformaldehyde and then permeabilized with 0.5% Triton X-100 plus 300 mM sucrose. Cells were then immunostained and visualized under an Olympus FV1000 confocal microscope. The primary antibodies used were anti-53BP1 (NB100-304, Novus Biologicals), anti-Oct4 (ab18976, Abcam), anti-Pten (ab130224, Abcam), and anti–phospho-Akt (Ser473) (ab81283, Abcam). The secondary antibodies used were Alexa Fluor 488–conjugated goat anti-mouse (A-11001, Life Technologies) and Texas red–conjugated goat anti-rabbit (T-2767, Life Technologies).
For Western blotting after siRNA-mediated knockdown or sgRNA-Cas9–mediated knockout, cells were allowed to recover in culture for 2 or 7 days, respectively. The primary antibodies used were anti-Akt1 (ab32505, Abcam), anti-53BP1 (ab21083, Abcam), and anti-actin (A3853, Sigma-Aldrich). For flow cytometric analysis after sgEGFP-mediated knockout, cells were allowed to recover in culture for 7 days followed by analysis of EGFP fluorescence with a BD LSRFortessa cell analyzer.
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4

Generating EGFR-mutant NSCLC Cell Lines

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NSCLC cell lines with mutated EGFR (19del), HCC827 (Keygenbio, Nanjing, China) were cultured at 37°C in a humidified 5% CO2 atmosphere. The cell lines were cultured in RPMI‐1640 medium. To culture the cell lines, 10% fetal bovine serum was supplemented in the medium. Gefitinib (Selleckchem, Houston, TX, USA), which is a type of EGFR–TKI, was mixed in the medium at increasing concentrations to generate and maintain resistant cell lines for approximately six months. The WNT/β‐catenin inhibitor XAV‐939 and WNT/β‐catenin activator WNT agonist 1 were purchased from Selleckchem (Houston, TX, USA).
The following primary antibodies were used: anti‐GAPDH (Abcam, ab181602), mTOR (CST,mAb #2983), Phospho‐mTOR (Ser2448) (CST, mAb #5536). AKT (Abcam, ab32505), p‐AKT (Abcam, ab192623).
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5

Protein Extraction and Western Blot Analysis

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The total protein of cells or tissues was extracted using PMSF-containing RIPA lysis buffer (R0010, Solarbio, China) pre-cooled at 4 °C, followed by BCA kit (20201ES76, Yeasen, Shanghai, China) to determine the protein concentration. The proteins separated by polyacrylamide gel electrophoresis were transferred to PVDF membrane (P2438, Sigma) by wet transfer method, and the membrane was blocked with 5% BSA at room temperature for 1 h. The blots were probed with dilute primary antibody rabbit anti-KLF5 (ab137676, 1:100), AKT2 (ab32505, 1:3000), LC3B (ab51520, 1:3000, Abcam, UK), Beclin-1 (ab207612, 1:2000, Abcam, UK), and GAPDH (ab181602, 1:10000) overnight at 4 °C. Thereafter, the membrane was incubated with HRP-labeled goat anti-rabbit secondary IgG (ab6721, 1:5000) at room temperature for 1 h. The above antibodies were purchased from Abcam (Cambridge, UK). The blots were visualized using the enhanced chemiluminescence and quantified with Quantity One v4.6.2 software, with GAPDH as internal control. All blots were derived from the same experiment and were processed in parallel.
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6

Western Blot Analysis of Rat Hippocampal Proteins

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The rat hippocampal proteins were resolved on 10% SDS-PAGE gels and were subsequently transferred onto PVDF membranes (Millipore, Billerica, Massachusetts, USA). After incubation in blocking buffer (0.5% Tween-20 in TBS, 5% BSA) for 1 h at room temperature, the membranes were blotted using antibodies against the target proteins for 1 h at room temperature. Membranes were then washed with TBST (TBS with 0.5% Tween-20) and incubated in 1:1,000 or 1:5,000 diluted 0.5% BSA for 1 h at room temperature (The antibody detail: ab32575, ab32505, ab40778, ab168364, ab8226, 1:1,000, Abcam, Cambridge, MA, USA; sc-133206, 1/5000, Santa Cruz, California, USA; #13256, #2332, #12979, #9832, #2795, #2399, #12409, #15115, #2118, 1:1,000, CST, Danvers, MA, USA). After washing three times with TBST, the bands on the membrane were visualized using an ECL detection system [73 (link)].
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7

Evaluating HMGA2, PI3K, Akt Signaling in CRC

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The protein levels of HMGA2, PI3K, p‐PI3K, p‐Akt, Akt in CRC cells were measured using immunoblotting assays. Cells were lysed in RIPA lysis buffer (Cat. P0013B, Beyotime, Shanghai, China), and the protein concentration was evaluated by BCA Protein Assay Kit (Cat. P0010, Beyotime Tech.). The 20‐50 μg of protein samples were loaded onto 10% SDS‐PAGE minigel and then transferred onto a 0.2 μm PVDF membrane (Cat. 1620177, Bio‐Rad, Hercules, CA, USA) by Bio‐Rad Mini Trans‐Blot® systems (Bio‐Rad). Afterward, the membrane was probed with the antibodies listed below: anti‐HMGA2 (ab97276, Abcam, Cambridge, UK), anti‐PI3K (ab86714, Abcam), anti‐p‐PI3K (ab182651, phospho Y607, Abcam), anti‐Akt (ab32505, Abcam), anti‐p‐Akt (ab81283, phospho S473, Abcam), and anti‐β‐actin (ab6276, Abcam; 1:1000 in TBST) at 4°C overnight, and incubated with HRP‐conjugated secondary antibody for 1 hour at room temperature (1:5000 in TBST, Cat. sc‐2004 and sc‐2005, Santa Cruz, Co. Ltd, Sant Cruz, CA, USA). Signals were visualized using ECL Substrates (Cat. 345818, Millipore, Billerica, MA, USA) and exposed to X‐film (Cat. X‐OMAT, Kodak, Rochester, NY, USA). The immunoblots were quantified using imageJ software (NIH, National Institute of Health, Bethesda, MD, USA) and normalized to endogenous β‐actin. The original blots were shown in Figure S1.
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8

Western blot analysis of signaling proteins

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Cell pellets were resuspended and lysed in RIPA buffer (50 mM Tris-HCl, pH 7.5, 150 mM NaCl, 1% Triton X-100, 10% glycerol), complemented with protease and phosphatase inhibitors cocktail (ThermoScientific). Total proteins extracts concentrations were determined through Bradford assay (Bio-Rad). Cytosol and nucleus protein fractions were obtained as previously described [47 (link)].
After 1 h blocking with 5% non-fat dried milk (EuroClone) or bovine serum albumin (SERVA) in Tris-buffered saline with 0.1% Tween (TBS-T), membranes were incubated with primary antibodies at 4 °C overnight. Primary antibodies used: anti-pFGFR1 (06-1433, Millipore), anti-FGFR1 (Abcam ab137765), anti-pSTAT3 (D3A7, Cell Signaling), anti-STAT3 (06596, Millipore), anti-pAKT1 (ab81283; Abcam), anti-AKT1 (ab32505; Abcam), anti-pERK1/2 (ab32538; Abcam), anti-ERK1/2 (ab17942; Abcam), anti t-GFP (TA150041, Origene) and β-actin (Sigma, A5441). After membrane incubation with horseradish-peroxidase-conjugated anti-rabbit secondary antibody (Immuno Reagents), the positive bands were visualized using the ECL kit SuperSignalTM West Pico PLUS Chemiluminescent Substrate (Thermo Scientific) as previously shown [48 (link)].
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9

Western Blot Analysis of Phospho-Akt and Phospho-MDM2

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The cell monolayers were washed with PBS and lysed at the indicated times. The lysates were collected and incubated on ice for 10 min. The lysates were cleared by centrifugation at 10,000g for 5 min at 4 °C. The supernatants were analyzed for total protein content with a BCA protein-assay kit (Beyotime). The total protein (30 μg) was resolved by 10% SDS–PAGE and transferred onto nitrocellulose membranes (Millipore). The membranes were blocked with 5% skim milk for 1 h at 37 °C and then incubated overnight at 4 °C with specific antisera: rabbit anti-phospho-Akt antibody (Ser473) (ab81283, Abcam), rabbit anti-Akt antibody (ab32505, Abcam), rabbit anti-phospho-MDM2 antibody (Ser166) (ab170880, Abcam), rabbit anti-MDM2 antibody (ab38618, Abcam), rabbit PI3K p85 antibody (ab40755, Abcam), rabbit anti-glyceraldehyde 3-phosphate dehydrogenase (GADPH) antibody (ab22555, Abcam) and rabbit anti-p53 antibody (9282, CST). After three rinses in TBST buffer, the membranes were incubated at 37 °C for 1 h with IRDye 800DX-conjugated anti-rabbit IgG (1:8000; Rockland Immunochemicals) diluted in TBST as a secondary antibody. The membranes were washed three times in PBST, then visualized and analyzed with an Odyssey infrared imaging system (LI-COR Biosciences).
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10

Immunoblot Analysis of Cell Signaling Proteins

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Cells were lysed in RIPA buffer (radioimmunoprecipitation assay buffer, Darmstadt, Germany) supplemented with ProBlock Gold phosphatase inhibitor cocktail (Gold Biotechnology, Inc., St Louis, MO, USA). Immunoblot analysis was performed as previously described.25 (link) All primary antibody incubations were performed at 4 °C overnight at the following dilutions: mouse monoclonal anti-CD24 (eBioscience, San Diego, CA, USA), 1:250; mouse monoclonal anti-GATA3 (Thermo, The Thermo Fisher Scientific Inc., Waltham, MA, USA), 1:100; rabbit polyclonal anti-mTOR (ab2732, Abcam, Cambridge, MA, USA), 1:500; mouse monoclonal AKT (ab32505, Abcam), 1:1000; rabbit monoclonal pAKT (ab81283, Abcam), 1:1500; mouse monoclonal pS6 (Thermo), 1:500 and mouse monoclonal anti-β-actin (Thermo), 1:10 000. For CD24 flow cytometric analysis, anti-CD24 was used in a 1:20 dilution.
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