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Nanodrop one onec microvolume

Manufactured by Thermo Fisher Scientific
Sourced in United States

The NanoDropTM One/Onec Microvolume is a spectrophotometer designed for the measurement of small volume samples. It utilizes a patented sample retention system to enable quick and easy measurement of samples as low as 0.5 microliters.

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3 protocols using nanodrop one onec microvolume

1

Colorimetric Quantification of GNT

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GNT is not UV-visible thus, for its detection, it was hitherto functionalized with a chromophore group. For the obtainment of the UV reagent, 50 mL of acid solution containing 0.75 g of KCl and 0.62 g of boric acid was prepared and poured into an NaOH solution (0.48 g in 50 mL of MilliQ water) achieving a final pH of about 8. Then, 11.16 mL of methanol, 0.54 mL of mercaptoethanol, and 0.45 g of phthaldialdehyde were added and stirred overnight. The reaction was prepared in a dark bottle and freshly before each analysis because it is photosensible [44 (link),45 (link),46 (link),47 (link)]. The GNT-eluted solution, after collection, was mixed with isopropanol and a UV reagent in a volume ratio of 1:1:1 just before measurement with a UV-Vis Spectrophotometer (NanoDropTM One/Onec Microvolume, Thermo Fisher Scientific, Waltham, MA, USA).
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2

Quantifying PI3K/Akt/mTOR Pathway Genes

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After incubating HepG2 cells at a density of 2×106 cells/4 mL in a 60 mm culture dish for 24 h and exposing them to the extracts for an additional 24 h, total RNA was extracted using E.Z.N.A.® Total RNA Kit I following the manufacturer’s instructions. The RNA contents were analyzed at absorbances of 260 and 280 nm using a spectrophotometer (NanoDropTM One/Onec Microvolume, Thermo Scientific, USA). TetroTM cDNA Synthesis Kit was used for the complementary DNA (cDNA) synthesis from messenger RNA templates at 5 μg/μL for quantitative reverse transcription-polymerase chain reaction for PI3K, Akt, and mTOR following the manufacturer’s instructions. Then, cDNA at 1 ng/μL was used for real-time PCR analysis, which was carried out using 5× HOT FIREPol® EvaGreen® qPCR Mix Plus (no ROX) in a CFX Connect Real-Time PCR System (Bio-rad CFX manager version 3.1) at the following conditions: 40 cycles 95°C for 30 s; 60°C for 30 s; 72°C for 30 s. The relative expression level of genes was quantified and normalized to that of GAPDH as the housekeeping gene using the 2-ΔΔCt method [22 (link)]. The sequences of the primers (10 pg/μL) are listed in Table 1.
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3

RNA Extraction and Reverse Transcription

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RNA extraction was performed using the RNeasy mini kit (QIAGEN, #74104), following the manufacturer's instructions. The quantity and quality of mRNA was measured by spectrophotometric analysis using a nanodrop (ThermoFisher, NanoDrop TM One/One c microvolume). RNA concentration was quantified using the optical density (OD) at 260 nm. The 260/280 nm ratios were used as a measure of quality and only samples with values between 1.8 -2.0 were considered acceptable. Reverse transcription of the mRNA was performed using the QuantiNova Reverse Transcription Kit (QIAGEN, #205411)
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