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Polaris q

Manufactured by Thermo Fisher Scientific
Sourced in United States, Italy

The Polaris Q is a high-performance gas chromatography-mass spectrometry (GC-MS) system designed for a wide range of analytical applications. It features a robust and reliable design, delivering precise and accurate results. The Polaris Q combines the separation capabilities of gas chromatography with the identification and quantification capabilities of mass spectrometry, making it a versatile tool for various industries and research fields.

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22 protocols using polaris q

1

GC-MS Analysis of Volatile Compounds in Eugenia klotzschiana

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Volatile compounds were analyzed using a gas chromatograph (Trace CG Ultra) coupled to the mass spectrometer (Polaris Q) with an ion-trap analyzer (Thermo Scientific, San Jose, CA, USA). Compounds were separated using a capillary column HP−5 MS (5% phenyl and 95% methylpolysiloxane) of 30 m long, 0.25 mm internal diameter, 0.25 μm film thickness, and helium gas with a constant flow rate of 1 mL min−1 (Agilent Techonolgies Inc., Waldbronn, Germany). The injector (splitless mode) was maintained for 5 min at a temperature of 250 °C, the ion source at 200 °C, and the interface at 270 °C. The oven was programmed at 40 °C for 1 min, followed by an increase in temperature at a rate of 12 °C min−1 until it reached 120 °C, maintaining it for 2 min. Then, at 15 °C min−1 to 150 °C and finally, at 20 °C min−1 to 245 °C, maintaining for 2 min.
The identification of volatile compounds was carried out using the National Institute of Standards and Technology Research Library (NIST). This identification was also based on articles that determined volatile compounds in Eugenia klotzschiana O. Berg. The total peak area was obtained in Xcalibur1.4 from Thermo Electron Corporation (Thermo Electron, San Jose, CA, USA) and analyzed in Microsoft Office Excel 2010®.
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2

NMR, Mass Spectrometry, and HPLC Analysis

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1D and 2D NMR spectra were recorded on a Bruker AVANCE™ III HD-400, equipped with a CryoProbe™ Prodigy or on a Bruker DRX-600 equipped with TXI CryoProbeTM in CDCl3 or CDCl3/CD3OD (δH values reported refer to CHCl3 or CHD2OD protons at 7.26 or 3.34 ppm, respectively; δC values refer to CDCl3 or CD3OD carbon at 77.0 or 49.0 ppm, respectively). High-resolution mass analyses were performed on a Q-Exactive Hybrid Quadrupole-Orbitrap Mass Spectrometer (Thermo Scientific, Milan, Italy) equipped with a HESI source on-line with a UHPLC Infinity 1290 (Agilent Technologies, Santa Clara, CA, USA). GC-MS analysis was performed on an ion-trap MS instrument in EI mode (70 eV) (Thermo, Polaris Q) connected with a GC system (Thermo, GCQ) by a 5% phenyl/methyl polysiloxane column (30 m × 0.25 mm × 0.25 µm, Agilent, VF-5ms) using helium as the gas carrier. HPLC purifications were carried out on a Shimadzu high-performance liquid chromatography system (Shimadzu, Kyoto, Japan) LC-20ADXR equipped with a Diode Array Detector SPDM-20A and a LUNA C-18(2) column 250 × 10 mm, 5 µm, 100 A (Phenomenex, Castel Maggiore, Italy). TLC plates (KieselGel 60 F254) and silica gel powder (Kieselgel 60 0.063–0.200 mm) were from Merck (Darmstadt, Germany). Chemicals were of analytical reagent grade and solvents of HPLC/LC-MS grade (Sigma-Aldrich, Milan, Italy) and were used without any further purification.
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3

GC-MS Analysis of Essential Oils

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The separation and identification of the main chemical compounds of each essential oil were carried out by gas chromatography (Trace GC ultra, Thermo, MN, USA), coupled to a mass spectrometer (Polaris-Q, Thermo, USA). Helium was used as carrier gas (1 mL/min) and the column used was a Rxi-5Sil MS (Restek, France) (40 m × 0.18 mm; thickness 0.18 µm). The injector temperature was 240 °C while the detector’s temperature was 200 °C. In total, 0.8 µL of the solution prepared in hexane at 0.5% was injected for each essential oil (splitless mode). The temperature program was set at 50 °C during 6 min, then increased at a rate of 2 °C/minute until reach 250 °C and held for 10 min. The essential oil components were identified based on their retention indices (comparing to the major compounds also analyzed) and peak area percents were used to obtain quantitative data (n = 2).
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4

Characterization of Antimicrobial Fraction CD-3PM

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The extracted antimicrobial fraction, CD-3PM, obtained from preparative thin layer chromatography (TLC) plates (described below) was analyzed by doing high performance liquid chromatography (HPLC) (Prominence, Shimadzu) using a C-18 column (Phenomenex Luna, 4.6 × 250 mm, 5 µm) at a flow rate of 1 mL/min with solvents acetonitrile and water. The semi-purified fraction was subjected to GC-MS analysis on a gas chromatograph (Trace GC Ultra, Thermo Scientific) hyphenated to mass spectrometer (Polaris Q, Thermo Scientific). The sample was injected into a Thermo TR-WaxMS column (30 m × 0.25 mm, 0.25 µm) and helium gas (99.999 %) at a flow rate of 1 mL/min was used as the carrier gas. For MS detection, the ion source temperature was maintained at 230 °C, electron ionization (EI) was performed with an ionization energy of 70 eV and mass range at m/z 40 - 600. The Fourier transform infrared (FTIR) analysis was carried out on a Spectrum 100 FTIR spectrometer (Perkin Elmer) by taking 1 mg of the sample in thin film of potassium bromide (KBr). The FTIR spectra were recorded within the range of 450 - 4000 cm-1. Nuclear magnetic resonance (NMR) data for both 1H and 13C spectra were recorded on a Bruker spectrometer (400 MHz) using deuterated chloroform (CDCl3) as the solvent.
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5

GC-MS Analysis of Organic Compounds

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The GC-MS analyses were performed on a Trace GC Ultra (Thermo Fisher Scientific) gas chromatography instrument equipped with a Rtx®-5 Restek capillary column (30 m × 0.25 mm i.d., 0.25 µm film thickness) and coupled with an ion-trap (IT) mass spectrometry (MS) detector Polaris Q (Thermo Fisher Scientific, Waltham, MA, USA).
A Programmed Temperature Vaporizer (PTV) injector and a PC with a chromatography station Xcalibur (Thermo Fisher Scientific) was used. The ionization voltage was 70 eV; the source temperature was 250 °C; full scan acquisition in positive chemical ionization was from m/z 40 up to 400 a.m.u. at 0.43 scan s−1. The GC conditions were the same as those described above for the gas chromatography (GC-FID) analysis.
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6

GC-MS Analysis of Volatile Compounds

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A Finnigan Trace GC Ultra (Thermo Fisher Scientific, Waltham, MA, USA) gas chromatograph equipped with an ion-trap mass spectrometer (Polaris Q, Thermo Scientific, MI, Italy) was used. A chromatographic separation was performed with a TRACE TR-5 SPB-5 fused-silica capillary column (30 m × 0.25 mm i.d., 0.25 mm film thickness) (Thermo Fisher Scientific, Waltham, MA, USA). Helium was the carrier gas, with a constant flow rate of 1.0 mL/min. The column temperature program was set as follows: 130 °C for 3 min, a 4 °C/min increase until 280 °C, and then 15 min at this temperature.
The mass spectrometer was operated in the electron impact positive (EI+) ionization mode with the source set at 220 °C. The electron energy was 70 eV, and the filament current 150 µA. Mass spectra were acquired in the 50–600 m/z range (0.55 scans/s). Analytes were detected using extracted-ion chromatograms, extracting the 117 m/z ion.
Chromatographic peak identification was carried out by a comparison of the volatile sample mass spectra with spectra in the National Institute of Standards and Technology (NIST) library (Available online: http://webbook.nist.gov/chemistry, accessed on 23 August 2021).
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7

GC-MS Analysis of Antimicrobial Fractions

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The antimicrobial fractions purified from the TLC plates were subjected to GC-MS analysis using a Gas Chromatograph (Model: Trace GC Ultra; Make: Thermo Scientific) coupled with Mass Spectrometer (Model: Polaris Q; Make: Thermo Scientific). The diluted samples (0.6 µL each) were injected into a Thermo TR-1MS column (30 m length × 0.25 mm i.d. × 0.25 µm film thickness). Helium gas (99.999 %) was employed as the carrier gas at a flow rate of 1 mL/min. The GC injector and MS transfer line temperatures were set at 250 and 290 ºC, respectively. The oven temperature was initially 50 ºC for 2 min and gradually increased upto 300 ºC (at 10 ºC/min) with a hold time of 15 min at the final temperature. For MS detection, the ion source temperature was maintained at 230 ºC, electron ionization (EI) was performed with an ionization energy of 70 eV and mass range at m/z 40 – 600.
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8

GC-MS Analysis of Essential Oils

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All the essential oils and the mixtures were analyzed via gas chromatography—GC (Trace GC ultra, Thermo, Waltham, MA, USA)—coupled with a mass spectrometer—MS (Polaris-Q, Thermo, Waltham, MA, USA)—in order to identify the main chemical compounds. An Rxi-5Sil MS (Restek, France) (40 m × 0.18 mm; thickness 0.18 µm) column was used and helium was the carrier gas (1 mL/min). A solution (0.8 µL) prepared in hexane at 0.5% was injected for each essential oil (splitless mode) with a temperature program set as follows: 50 °C for 6 min followed by an increase of 2 °C/min until reaching a temperature of 250 °C, which was then held for 10 min. The detector and injector temperatures were fixed at 200 °C and 240 °C, respectively. Major compounds were first analyzed in order to identify their retention indices, which were further used to identify the essential oils’ components. Peak area percentages were used to obtain quantitative data (n = 3).
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9

GC-MS Analysis of Lanthanum Oxide

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The analysis of LAO was performed on a Trace GC Ultra (Thermo Fisher Scientific) gas chromatography instrument equipped with a Rtx®-5 Restek capillary column (30 m × 0.25 mm i.d., 0.25 μm film thickness) and coupled with an ion-trap (IT) mass spectrometry (MS) detector Polaris Q (Thermo Fisher Scientific, Waltham, MA, USA).
A programmed temperature vaporizer (PTV) injector and a PC with a chromatography station Xcalibur (Thermo Fisher Scientific, Waltham, MA, USA) were used. The ionization voltage was 70 eV; the source temperature was 250 °C; full scan acquisition in positive chemical ionization was from m/z 40 up to 400 a.m.u. at 0.43 scan s−1. The column temperature was maintained at 40 °C for 5 min, then programmed to increase to 250 °C at a rate of 3 °C/min and held, by using an isothermal process, for 10 min; the carrier gas was He (1.0 mL/min); 1 μL of each sample was dissolved in n-hexane (1:500 n-hexane solution) and injected. The experiment was repeated three times.
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10

Synthesis of Carbazole Derivatives

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Triphenylmethyl(9-octylcarbazol-3-yl)phosphonium bromide and 3-iodo-9-octylcarbazole were synthesized according to procedures described before [59 (link),60 (link)]. The other compounds were obtained commercially and used without further purification unless stated differently. The synthetic procedures were not optimized. The synthesis process for 1A to 3A and 1B to 3B) is outlined in Scheme 1, while the process for 4A and 4B is outlined in Scheme 2. NMR spectra were recorded on an Avance 400 spectrometer (Bruker, Billerica, MA, USA). The following abbreviations were used: s = singlet, d = doublet, dd = doublets of doublets, ddd = doublets of doublets of doublets, m = multiplet, t = triplet. All coupling constants J are expressed in hertz (Hz). Chemical shifts are given in parts-per-million (ppm). Tetramethylsilane was used as the internal reference. Mass spectra were recorded on a Polaris Q (ThermoFisher, Waltham, MA, USA) or Hewlett Packard 5973 (Agilent, Santa Clara, CA, USA) instrument.
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