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6 protocols using byl719

1

Pharmacological agents for cancer research

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BEZ235 was kindly provided by Novartis Pharma AG (Basel, Switzerland). Docetaxel was obtained from Sigma Aldrich (St. Louis, MO), gefitinib, and Ku0063794 from Biovision (Milpitas, CA), and PD-98059, GDC-0941, and BYL719 from Cayman Chemicals (Denver, CO). All compounds were diluted to stock solutions and stored according to supplier recommendations.
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2

Glioma Tumorsphere Culture and Chemotherapeutic Testing

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This study was conducted in accordance with Declaration of Helsinki. All tumor and blood samples were collected with patient consent under protocols approved at Yokohama City University (YCU) Hospital and Massachusetts General Hospital (MGH) Institutional Review Boards. To create glioma tumorsphere lines, fresh tumor specimens were obtained from surgery and enzymatically dissociated with 0.1% of Trypsin and DNase. Tumorsphere lines were cultured in serum-free neural stem cell medium, as previously described (3 (link),25 (link),28 (link)). All tumorsphere lines were cryopreserved less than passage 3 to use for in vitro experiments. Temozolomide (TMZ, Sigma), Nimustine (ACNU, Tokyo Chemical Industry), Lomustine (CCNU), Procarbazine (Sigma), Vincristine (Sigma), FK866 (Sigma), LY294002 (Sellek), GDC-0068 (Cayman), BYL719 (Cayman), Everolimus (Cayman), and AGI-5198 (Sigma) were used.
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3

Evaluating Small Molecule Inhibitors

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MK-2206 (A10003), RAD001 (A10374), CAL-101 (A10172), LY294002 (A10547), and z-VAD-FMK (A12373) were purchased from AdooQ Biosciences. BAY 80-6946 (MedChemExpress, HY-15,346), BYL719 (Cayman Chemical, 16986), NVP-BGT226 (Cayman Chemical, 22142), Staurosporine (Cayman Chemical, 81590), and GSK2126458 (Cayman Chemical, 17377) were purchased from vendors.
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4

Prostate Cancer Cell Line Maintenance and PI3K Inhibition

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Prostate cancer cell LNCaP, C4-2, 22RV1, DU145 and PC-3 lines were maintained in a humidified atmosphere of 5% CO2, RPMI1640 media supplemented with 10% fetal bovine serum (FBS) and antibiotics. LNCaP/shPIK3CB#3 cell subline was established by stable transfection with a pU6+2-p110βshRNA vector as reported previously (13 (link)). C4-2B and its MDV3100-resistant subline cells (C4-2B/MDV-R) were obtained from Dr Allen Gao at UC Davis (29 (link)). TGX221 and its analogs were synthesized in house as described previously (28 ) and the aqueous solubility assay was conducted as reported (30 (link)). PI3K inhibitors including BKM120 (catalog #11587), BYL719 (catalog #16986), AZD8186 (catalog #17384), AZD6482 (catalog #15250), GSK2636771 (catalog #17380) and Akt inhibitor VIII (AKT-i8, catalog #14870) were purchased from Cayman Chemicals (Ann Arbor, MI). Antibodies for p110α (clone C73F8), p110β (clone C33D4), p110γ (clone D55D5), VPS34 (clone D4E2), Cyclin D1 (clone 92G2), CDK6 (clone DCS83), p27kip1 (catalog #2552), pan-Akt (clone C67E7), phospho-Akt S473 (clone D9E) and T308 (clone 244F9) were obtained from Cell Signaling (Danvers, MA). Antibody for β-Actin (clone AC-15) was purchased from GeneTex Inc (Irvine, CA). Secondary antibodies for mouse and rabbit IgG as well as chemiluminescent reagent kit were purchased from Santa Cruz Biotech (Santa Cruz, CA).
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5

Antibodies for EGFR-Hippo Signaling Study

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Anti-pEGFR (Y1068) (#2234, 1:5000), EGFR (#4267, 1:5000), pYAP (S127) (#4911, 1:2000), YAP (#14074, 1:1000), YAP/TAZ (#8418, 1:1000), pLATS1 (T1079) (#8654, 1:1000), LATS1 (#3477, 1:1000), LATS2 (#5888, 1:1000), pMST1/2 (T183/180) (#3681, 1:1000), MST1 (#3682, 1:1000), pMOB1 (T35) (#8699, 1:1000), MOB1 (#13730, 1:1000), TEAD1 (#12292, 1:1000), HA-tag (#3724, 1:10000), Myc-tag (#2276, 1:5000), FLAG-tag (#2368, 1:5000), GST-tag (#2624, 1:10000), pTyrosine (P-Y-100) (#9411, 1:2000), CTGF (#86641, 1:1000), CYR61 (#14479, 1:1000), pERK1/2 (T202/Y204) (#4370, 1:10000), ERK1/2 (#4696, 1:10000), pAKT (S473) (#4060, 1:5000), AKT (#9272, 1:5000), pS6 (S235/236) (#4858, 1:10000), S6 (#2217, 1:10000), PARP (#9542, 1:1000), GRB2 (#36344, 1:1000), β-actin (#4967, 1:5000) were purchased from Cell Signaling Technology (MA).
EGF (#E9644) was purchased from Sigma-Aldrich Inc (MO). BYL719 (#16986) was purchased from Cayman Chemical (MI).
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6

Gastric Cancer Cell Lines for Research

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The EBV+ gastric cancer cell line YCCEL1 was obtained from Elliott Kieff. The EBV+ cell line SNU719 was obtained from Adam Bass. The EBV− gastric cancer cell line HGC-27 was obtained from Sigma, SNU-1 and SNU-16 were from ATCC. HEK-293T was obtained from ATCC. Cell lines with stable Streptococcus pyogenes Cas9 expression were generated by lentiviral transduction and blasticidin selection (5 mg/mL), as previously described 85 (link). Cells were cultured in a humidified incubator with 5% CO2 at 37°C. The cells were routinely tested and certified as mycoplasma-free using the MycoAlert kit (Lonza).
YCCEL1 cells were grown in Eagle’s Minimum Essential Medium (EMEM) medium (ATCC) with 10% fetal bovine serum (FBS, Gibco). SNU719 and SNU16 cells were grown in RPMI 1640 medium (Gibco, Life Technologies) with 10% FBS. 293T was grown in Dulbecco’s Modified Eagle’s Medium (DMEM) with 10% FBS. HGC-27 were grown in EMEM (ATCC) with 2mM Glutamine (Gibco, Life Technologies), 1% Non- Essential Amino Acids (NEAA, Gibco, Life Technologies), and 10% FBS. BYL719 (Alpelisib, Cat#16986, Cayman chemical) was used at 0.5mM. Antibodies used in the study are listed in the Reporting Summary.
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