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5 dsa

Manufactured by Merck Group
Sourced in Brazil, United States

5-DSA is a laboratory reagent used in various biochemical and analytical applications. It is a stable and well-characterized nitroxide spin label that can be attached to biological macromolecules, such as proteins and lipids, to study their structure and dynamics using electron spin resonance (ESR) spectroscopy. The core function of 5-DSA is to provide a stable and site-specific spin label for ESR analysis, allowing researchers to investigate the local environment and conformational changes of the labeled molecules.

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5 protocols using 5 dsa

1

Spin-Labeling of Trypanosoma cruzi Epimastigotes

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The stock solution (2 mg/mL) of the spin label 5-doxyl stearic acid (5-DSA, Merck, Barueri, Brazil) was prepared in ethanol. Epimastigotes were spin-labeled as described by Alonso et al. [28 (link)] with minor modifications. Briefly, epimastigotes (5.0 × 107 cells/mL) were incubated in 2 mL of LIT medium (without FBS) containing the compounds (5 × IC50 and 10 × IC50 values) for 24 h. Subsequently, the cells were washed with PBS (2500× g, 10 min), suspended in 50 µL of the same buffer, and each sample containing 1 x 108 parasites was spin-labeled with 0.25 µL of 5-DSA ethanolic solution, and the system was gently mixed. The cells were then introduced into 1 mm capillary tubes, which were flame-sealed and centrifuged (2000× g, 5 min) to concentrate the parasites. EPR measurements were performed on the EPR EMX-Plus spectrometer (Bruker, Rheinstetten, Germany) using the following instrumental settings: microwave power, 2 mW; microwave frequency, 9.45 GHz; modulation frequency, 100 kHz; modulation amplitude, 1.0 G; magnetic field scan, 100 G; sweep time, 168 s; and sample temperature, 25 ± 1 °C. The total scanning range of the magnetic field in each EPR spectrum was 100 G (x axis), and the intensity was measured in arbitrary units (y axis).
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2

Structural Dynamics of gp36 CHR-MPER in Micelles

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2D 1H-15N-HSQC experiments of 0.5 mg of 737-786gp36 CHR–MPER in DPC/SDS mixed micelles were acquired in the absence and in the presence of 5-doxylstearic acid (5-DSA). 5-DSA purchased from Merck was withdrawn from a 10 mM methanol-d4 stock solution. All experiments were acquired with 512 increments of 256 time points and 32 scans on a 600 MHz Bruker Avance III spectrometer equipped with a TXI probe, running with TopSpin 2.1.
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3

PoP-liposome Permeabilization by ESR

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PoP-liposomes were formed with the inclusion 1% 5-DSA (Sigma, no. 253634) into the standard formulation using the thin film hydration method. A Bruker ER-200 ESR X-band spectrometer was used with a TE102 rectangular cavity and with a Bruker B-VT-1000 nitrogen flow temperature controller. The ESR frequency was 9.44 GHz, field modulation of 1.9 Gauss and microwave power of 0.64 mW. The sample size was ~20 μl in a 1 mm inner diameter quartz tube at the indicated temperatures. Samples were irradiated using a 658 nm 200 mW laser that was focused on the ESR sample through light slots on the Bruker X-band ESR cavity, which are conditions that induce PoP-liposome permeabilization.
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4

Lipid Bilayer Preparation and Characterization

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Non-hydrogenated egg phosphatidylcholine (PC) (Coatsome NC-50; PC purity≥95%) was purchased from NOF Corporation (Tokyo, Japan). Cholesterol (Chol) was purchased from Sigma-Aldrich, St Louis, MO, USA. Tween 20 was purchased from Ajax Finechem (Auckland, New Zealand). Sodium fluorescein (NaFl), d-limonene, 1,8-cineole, and geraniol were purchased from Sigma-Aldrich. 5-DSA and 16-DSA were purchased from Sigma-Aldrich. Lissamine™ rhodamine B 1, 2-dihexadecanoyl-sn-glycero-3-phosphoethanolamine triethylammonium salt (Rh-PE) was purchased from Invitrogen, CA, USA. All other reagents were of analytical grade and were commercially available.
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5

Mitoxantrone-based Liposome Characterization

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Mitoxantrone dihydrochloride, NaTC, NaTDC and the spin probes 5-DSA, 12-DSA and 16-DSA were analytical grade and supplied by Sigma Aldrich (St. Louis, MO, USA). All the compounds were used without further purification. Experiments were performed in 0.1 M phosphate buffer (pH 7.4) and 0.1 M carbonate buffer (pH 10) and deionized water (18.2 MΩcm, Mili-Q water purification system) was used for the preparation of solutions.
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