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7 protocols using anti alp

1

Protein Extraction and Western Blot Analysis

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Proteins were extracted from PDLSC sheets with different treatments. Primary antibodies were purchased from Abcam (anti-Runt-related transcription factor 2 (Runx2), anti-ALP, anti-collagen 1 (COL1), anti-osteopontin (OPN), and anti-sequestosome 1/p62 (p62)) or Cell Signaling Technology (anti-LC3) (Danvers, MA, USA). The blots were imaged using a chemiluminescent imaging system (Tanon Science & Technology Co., Ltd., Shanghai, China).
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2

Protein Expression Analysis by Western Blot

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Cells were lysed by RIPA buffer supplemented with protease inhibitor. The proteins were separated by SDS-PAGE and transferred onto nitrocellulose membranes. The membranes were incubated with primary antibodies, then with horseradish peroxidase (HRP)-conjugated secondary antibodies, and visualized by chemiluminescence reagent (Proteintech, Wuhan, Shanghai). The primary antibodies used included antibodies produced by Abcam (Cambridge, MA, USA): anti-osterix, anti-ALP, and anti-osteopontin (OPN); antibodies by Cell Signaling Technology (Danvers, MA, USA): anti-PPARγ, anti-C/EBPα, anti-phospho-src homology 2 domain-containing transforming protein C1 (SHC1) (Tyr317), anti-ERK1/2, and anti-phospho-ERK1/2 (Thr202/Tyr204); antibody by ABclonal (Wuhan, China): anti-nuclear factor of activated T cells 1 (NFATC1); antibody by Beyotime (Shanghai, China): anti-cathepsin K (CTSK); antibodies by Proteintech (Wuhan, China): anti-OSMR, anti-fatty acid-binding protein 4 (FABP4), anti-microtubule-associated protein 1 light chain 3 (LC3), anti-autophagy-related gene 5 (ATG5), anti-autophagy-related gene 7 (ATG7), anti-Beclin 1, anti-P62, anti-SHC1, and anti-β-actin. The expression levels of the target genes were analyzed by dividing the grayscale of the target bands with that of β-actin.
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3

Western Blot Analysis of Osteogenic Markers

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Total proteins were extracted with lysis buffer (10 mM Tris-HCL, 1 mM EDTA, 1% sodium dodecyl sulfate, 1% Nonidet P-40, 1:100 proteinase inhibitor cocktail, 50 mM b-glycerophosphate, and 50 mM sodium fluoride). Aliquots of 20–60 mg per sample were separated by 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis, transferred to the polyvinylidene fluoride membranes and blocked with 5% nonfat milk powder in PBST (PBS with 0.1% Tween). Next, they were incubated with the following primary antibodies overnight: anti-Osterix, anti-Runx2, anti-ALP, anti-P65, anti-p-P65, anti-IKBα, anti-IKK, anti-p-IKK (Cell Signaling Technology). The membranes were then incubated with horseradish peroxidase-conjugated anti-mouse or anti-rabbit IgG secondary antibodies (Boster, Wuhan, China). The blots were visualized using an enhanced chemiluminescence kit (Amersham Biosciences, Piscataway, NJ, USA) according to the manufacturer’s recommended instructions.
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4

Protein Expression Analysis of Valve Interstitial Cells

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Total protein and nuclear protein lysates were extracted from cultured VICs using commercial buffers (Thermo Fisher, USA) according to the manufacturers' instructions. The primary antibodies used in this study were anti-Runx2 (ab23981, 1:500, Abcam, USA) and anti-IL-21 (ab119542, 1:1000, Abcam) along with anti-STAT3 (#4695, 1:1000, Cell Signaling Technology, USA) and anti-ALP (#8480, 1:1000 Cell Signaling Technology). Anti- GAPDH (60004-1-Ig, 1:5000) was purchased from Proteintech (China). Primary antibodies were incubated overnight at 4 °C. Blots were washed three times for 15 min with Tris-buffered saline with 0.1% Tween-20 (TBST) followed by incubation for 2 h at room temperature with secondary antibodies. After three washes for 15 minutes with TBST, specific staining was detected using chemiluminescence (ECL) system. All bands were densitometrically analysed with ImageJ.
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5

Western Blot Analysis of Osteogenic Markers

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Proteins were separated by SDS‐PAGE and transferred onto nitrocellulose membranes. The membranes were incubated overnight with primary antibodies. The antibodies we used include rabbit antibodies by Abcam (Cambridge, MA, USA): anti‐osterix (polyclonal), anti‐C/EBPa (monoclonal), anti‐β‐catenin (monoclonal), anti‐opsteopontin (monoclonal) and anti‐ALP (monoclonal); rabbit antibodies by Cell Signalling Technology (Danvers, MA, USA): anti‐PPARγ (monoclonal), anti‐LRP6 (monoclonal) and anti‐Phospho‐LRP6 (polyclonal); mouse mAb by MBL (Nagoya, Japan): anti‐Runx2; rabbit polyclonal antibodies by Proteintech (Wuhan, China): anti‐aP2, and anti‐β‐actin; rabbit polyclonal antibody by SAB: anti‐H3K9me2 and rabbit polyclonal antibody by Bioworld: anti‐H3K27me2. The membranes were then incubated with the corresponding horseradish peroxide‐labeled IgG (1:3000) for 2 hours. Chemiluminescence reagent (Advansta, Menlo Park, CA, USA) was finally used to visualize the results.
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6

Protein Expression Analysis of Stem Cell Differentiation

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Total proteins were extracted using RIPA lysis buffer and protein concentration was measured using a BCA assay kit (Beyotime). About 30 μg proteins were separated by SDS‐PAGE and then transferred onto nitrocellulose membranes. After blocking with 5% non‐fat milk, the membranes were incubated sequentially with primary antibodies and horseradish peroxidase (HRP)‐conjugated secondary antibodies. The primary antibodies used included antibodies by Abcam: anti‐low‐density lipoprotein receptor‐related protein 6 (LRP6) (ab134146), anti‐ALP (ab108337), and anti‐osterix (ab94744); antibodies by Cell Signalling Technology: anti‐PPARγ (#2443), anti‐C/EBPα (#8178); anti‐Runx2 (#12556), anti‐phospho‐LRP6 (S1490) (#2568), anti‐non‐phospho‐β‐catenin (#8814), anti‐phospho‐GSK3β (S9) (#5558), anti‐phospho‐Smad1/5(S463/465) (#9516) and anti‐GSK3β (#12456); antibodies by Abclonal: anti‐Smad5 (A1947); antibodies by Proteintech: anti‐Smad1 (10429‐1‐AP); anti‐β‐catenin (51067‐2‐AP), anti‐osteopontin (25715‐1‐AP); anti‐fatty acid binding protein 4 (FABP4) (12802‐1‐AP), and anti‐β‐actin (66009‐1‐Ig). The bands were visualized by chemiluminescence reagent (Proteintech). The relative expression levels of the target genes were calculated by dividing the intensity of the target genes by that of β‐actin.
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7

Antibody Validation and Gene Regulation Assays

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Antibodies: Anti-Dlx2 (catalog no. 1649-1) was purchased from Epitomics, Inc. (Burlingame, CA). Anti-ALP (catalog no. 9516) was purchased from Cell Signaling Technology (Danvers, MA). Anti-Ocn was purchased from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA).
The ALP assay kit, LabAssay™ ALP, was purchased from Wako Pure Chemical Industries, Ltd. (Osaka, Japan).
miR-185-5p mimic, mimic control (miR-NC), and miR-185-5p inhibitor were synthesized in Genepharma (Shanghai, China).
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