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4 protocols using sca 1

1

Immunostaining of Skin Sections

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Paraffin- or optimal cutting temperature compound-embedded tissues were sectioned and stained6 (link)7 (link) using the following primary antibodies (all diluted 1:100 unless stated otherwise) for immunofluorescence labelling: Lrig: R&D Systems, FAB3688G; CD26: R&D Systems, AF954; Sca1: R&D Systems, AF1226; PDGFRa: R&D Systems, AF1062; Collagen III: Abcam, ab7778, Collagen11a1: Abcam, ab64883; Elastin: Abcam, ab21610; Caveolin: Cell Signaling Technology, 3267; phospho-Histone H3 (Ser10) antibody: Cell Signalling Technology, 970; Active Caspase-3: RnD Systems, AF835; K14: Covance, PRB-155P, 1:500; GFP: Abcam, ab13970, 1:500; RFP: Rockland, 600-401-379, 1:300. EdU staining was performed with a Click-it EdU imaging kit (Invitrogen) according to the manufacturer's recommendations. Images were acquired with a Nikon A1 Upright Confocal microscope. Images of H&E- and Herovici-stained sections were acquired with a Hamamatsu slide scanner. Representative images of skin from two to three independent experiments with at least three biological replicates per group are shown.
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2

Characterization of Mesenchymal Stem Cells

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ATMSCs were characterized by incubation with 10 µl primary antibody against Sca-1, CD105, CD106, CD44, CD29, CD73, CD11b, or CD45 (R&D Systems; Minneapolis, Minn.) for 30 minutes on ice. Cells were washed and incubated with phycoerythrin-labeled secondary Goat F(ab’)2 Anti-rat IgG (R&D Systems; Minneapolis, Minn.). Cells were washed and analyzed by flow cytometry using rat IgG2A (R&D Systems; Minneapolis, Minn.) as isotype control. At least 10,000 events were counted for each sample.
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3

Intervertebral Disc Regeneration: Histological and Imaging Protocols

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For histology, neonatal (p5) and adult (p112) mice caudal level (c) 4/5 was injured and c5/6 was used as an internal control with 3 animals per group. For fluorescence imaging and immunofluorescence of sections, tail segments were fixed in 4% paraformaldehyde and frozen in OCT medium. Alternating sagittal cryosections (12 μm) were collected to capture the IVD from outer AF to the opposite outer AF. Immunostaining was carried out using antibodies against Sca-1 (R&D Systems), type I collagen (Abcam), nucleostemin (Neuromics), F4/80 (Affymetrix), α-SMA (Sigma), PECAM (CD31) (BD Pharmingen), MCAM (CD146) (Santa Cruz), and CK19 (Abcam), with DAPI counterstaining (1:1000) to visualize cell nuclei. Primary and secondary dilutions used are listed in Supplemental Table 2. EdU and TUNEL assays were performed using the Click IT EdU and Click IT TUNEL kits (Life Technologies), according to manufacturer’s instructions with appropriate positive controls (Supplemental Fig. 4). All images were acquired using Zeiss Axio Imager microscope; an Apotome was used for optical sectioning of fluorescent images.
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4

Postmortem Cardiac Tissue Analysis

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Postmortem, heart and lung weights were measured and hematoxylin-eosin–stained heart, lung, liver, and spleen tissue were surveyed. Cardiac interstitial fibrosis was quantified by computerized imaging analysis (cellSens 1.3; Olympus, Tokyo, Japan) of phosphotungstic acid hematoxylin-stained sections. Myocardial disarray was evaluated by laser confocal microscopy (Zeiss LSM 510; Carl Zeiss, Thornwood, NY) following sarcomeric α-actinin (1:200; Sigma-Aldrich, St Louis, MO), along with nuclear 4′,6′-diamidino-2-phenylindole (Molecular Probes, Eugene, OR) staining. Cell proliferation and cardiac stem cells were evaluated by immunostaining for Ki67 (1:400; D3B5; Cell Signaling Technology, Danvers, MA) and Sca-1 (1:100; R&D Systems, Minneapolis, MN), respectively.26 (link) Engraftment of implanted iPS cells was tracked using a β-galactosidase antibody (1:5000; Abcam, Cambridge, MA). Ultrastructural evaluation, including percent area of myofibrils in cytoplasm,27 (link),28 (link) was performed by transmission electron microscopy (JEOL 1200 EXII; JEOL Ltd, Tokyo, Japan).
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