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14 protocols using ab60178

1

Protein Expression Analysis in Zebrafish

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Total proteins were extracted from zebrafish larvae or cell lysates with a RIPA lysis kit (C1053; Applygen Technologies Inc., Beijing, China), separated using 12% SDS-PAGE, and transferred to a nitrocellulose membranes (T41524; PALL, Mexico), which were blocked with 5% milk in Tris-buffered saline for 1 h at room temperature and then incubated with primary antibodies anti-LOX-1 (ab60178, Abcam), anti-VE-cadherin (ab33168, Abcam), anti-N-cadherin (13A9, mAb #14215, CST), anti-α-SMA (ab7817, Abcam), anti-LC3B (M186-3, MBL), anti-p62 (PM045, MBL), anti-LAMP2 (sc-18822, Santa Cruz), or anti-β-actin (HC201-01, ZSGB-BIO Co) overnight at 4 ºC. After washing, the blots were incubated with goat anti-mouse or goat anti-rabbit immunoglobulin G (ZSGB-BIO) for 1 h and protein bands were visualized by an immobilon western chemiluminescent horseradish peroxidase substrate (Millipore, Billerica). The western blot images are representatives of 4-6 independent experiments with corresponding histograms.
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2

Kidney Fibrosis Immunohistochemistry Protocol

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Staining was performed on 2-μm-thick paraffin kidney sections that were pretreated with a heat-based antigen retrieval approach. The primary antibodies used were Col3a (Abcam, #ab-6310), LOX (Abcam, #ab-60178), α-SMA (a specific marker of myofibroblasts) (Abcam, #ab-7817), Pan Cytokeratin (a specific marker of epithelial cell) (Abcam, #ab-7753) and CTR1 (Abcam, #ab-129067). The sections were incubated with the primary antibodies at 4 °C for 1–2 nights, followed by incubation with biotin-labeled secondary antibodies and horseradish peroxidase (HRP)-labeled tertiary antibodies (DAKO). The sections were developed using a 3,3′-diaminobenzidine (DAB) kit (Vector, #SK4100), counterstained with hematoxylin, dehydrated, and examined under a light microscope. For colocalization immunofluorescence staining, the slides were incubated with Alexa Fluor conjugated secondary antibody (Invitrogen, #Alexa Fluor 568-A11011, Alexa Fluor 488- A11029) for 2 h at room temperature. Zeiss confocal microscope was used to observe the labeled slides.
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3

Western Blot Analysis of Protein Expression

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The cells were harvested and lysed using total protein lysis buffer (Cell Signaling Technology, Inc., Danvers, MA, USA). A total of 30 µg of protein was separated on a 10% polyacrylamide-SDS gel, blotted onto a PVDF membrane (Millipore, Billerica, MA, USA) and blocked with 5% non-fat milk (Sangon Biotech Co., Ltd., Shanghai, China). After incubation with the primary antibody overnight at 4°C and the corresponding secondary antibody at 37°C for 1 h, the membrane was developed using an ECL kit (Pierce, Rockford, IL, USA). The antibodies used were as follows: Rabbit anti-GAPDH (1:1,000) (GP10353; Nuoyang, Hangzhou, China); rabbit anti-p-p65 (1:1,000; no. 3033); rabbit anti-p-p38 (1:1,000; no. 4511); rabbit anti-p-JNK (1:1,000; no. 9255); rabbit anti-p-ERK (1:1,000; no. 3510) (all from Cell Signaling Technology, Inc.); rabbit anti-cluster of differentiation 36 (CD36; 1:1,000; ab133625); rabbit anti-LOX-1 (1:1,000; ab60178); rabbit anti-NONO (1:1,000; ab70335); rabbit anti-SFPQ (1:1,000; ab38148) (all from Abcam, Shanghai, China); goat anti-rabbit (1:5,000; GP853); and goat anti-mouse (1:5,000; GP843) (both from Nuoyang).
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4

Western Blot Analysis of Collagen and Lysil Oxidase

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Protein expression of type I (Santa Cruz Biotechnology Inc., Santa Cruz, CA, USA, col1a1, sc-8784-r) and type III collagen (Abcam, Cambridge, UK, col3a1, ab6310) and lysil oxidase (Abcam, LOX1, ab60178) was analyzed by Western blot as previously described [50 (link), 51 (link)]. Samples were separated on polyacrylamide gel and then transferred to a nitrocellulose membrane. After blockage, the membrane was incubated with the primary antibodies overnight at 4 °C. The membrane was then washed with PBS and Tween 20 and incubated with secondary peroxidase-conjugated antibodies (Santa Cuz Biotechnology, anti-mouse, sc-2005, and anti-rabbit, sc-2004) for 90 min at room temperature. ECL western blotting substrate (Pierce Protein Research Products, Rockford, USA) was used to detect bound antibodies. The membrane was then stripped (Restore Western Blot Stripping Buffer, Pierce Protein Research Products, Rockford, USA) to remove antibodies. After blockage, membrane was incubated with anti-GAPDH antibody (Santa Cruz Biotechnology, GAPDH 6C5 sc-32233). Protein levels were normalized to GAPDH.
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5

Protein Expression Analysis of Key Cellular Pathways

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Total protein was extracted and an equal amount of protein was electrophoresed on sodium lauryl sulfate polyacrylamide gel (SDS-PAGE). The protein was then transferred to a PVDF membrane and blocked with 5% skim milk powder for 2 h. Then, primary antibodies against LOX1 (Abeam, ab60178, 1 : 1000), NLRP3 (Abcam, ab232401, 1 : 1000), cleaved caspase 3 (Novus, MAB835, 1 : 1000), SIRT3 (Abcam, ab189860, 1 : 1000), and aconitase 2 (NOVUS, NBP1-90264, 1 : 1000) were added and incubated at 4°C for the night. GAPDH (Abcam, ab8245, 1 : 2000) was served as the internal control. Then, the samples were incubated with HRP-conjugated secondary antibody (1 : 2000) for 2 hours at room temperature. Chemiluminescence detection was performed using a SuperSignal West Pico chemiluminescent substrate.
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6

Protein Expression Analysis Protocol

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Routine procedures were followed for protein extraction and immunoblotting using β‐actin as a loading control.[52] The primary antibodies were as follows: β‐actin (ab8227, Abcam), p‐Sub1/Sub1 (G‐20, Santa Cruz Biotechnology), iNOS (ab3523, Abcam), Arg1 (ab124917, Abcam), Retnlb (ab11429, Abcam), Abca1 (NB400‐105, Novus Biologicals), Abcg1 (NB400‐132, Novus Biologicals), Olr1 (ab60178, Abcam), and Irf1 (8478, CST). To quantify the band intensities, the films were scanned using a Scanmaker 1000XL (Microtek Lab, Santa Fe Springs, CA). The resulting images were analyzed using an Image Pro Plus v6.1 Analyzer (Media Cybernetics, Rockville, MD).
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7

Western Blot Analysis of Inflammatory Markers

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Total protein was extracted from treated cells using 1% RIPA Lysis Buffer (Beyotime, Jiangsu, China) with a phosphorylation inhibitor (Roche, Indianapolis, USA). The total protein concentration for each sample was measured with a bicinchoninic acid (BCA) kit (Beyotime). Equal amounts of protein samples were then subjected to SDS-PAGE and proteins were then transferred to PVDF membranes (Beyotime). The membranes were blocked with 5% skim milk at room temperature for 1 hr and incubated with the primary antibodies against LOX-1 (1:1,000, ab60178, Abcam), NLRP3 (1:1,000, ab4207, Abcam), ASC (1:5,000, ab127537, Abcam), caspase1 (1:1,000, ab1872, Abcam), mature IL-1β (1:1,000, ab200478, Abcam) and β-actin (1:1,000, ab8226, Abcam). Subsequently, the membranes were incubated in anti-rabbit IgG horseradish peroxidase conjugated antibody (1:5,000; Abcam) for 1 hr at room temperature. The immune complexes were detected using the SuperSignal west pico kit (Shanghai solarbio Bioscience & Technology, China). The intensities of the signals were quantified using ImageJ software 6.0.
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8

Quantification of Ox-LDL-Induced Protein Expression

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Total protein of ox-LDL-induced HAECs with transfection was extracted with radio-immunoprecipitation assay (RIPA) lysis buffer (Thermo Fisher Scientific). Next, total protein was segregated with sodium dodecyl sulfate-polyacrylamide gel electrophoresis (8-12%, SDS-PAGE). Following that, the wet electrophoretic transfer method was executed for transference of the segregated protein to polyvinylidene difluoride (PVDF) membranes (Millipore, Billerica, MA, USA). Afterward, tris buffered saline tween (TBST) buffer with 5% skim milk was employed to block the PVDF membranes. After that, the PVDF membranes were incubated with primary antibodies overnight at 4°C. The antibodies were as follows: anti-Nod2 (ab31488, 1 : 1000, Abcam), anti-LOX-1 (ab60178, 1 : 1000, Abcam), and anti-β-actin (ab11003, 1 : 1000, Abcam). Then, the membranes were incubated with goat anti-mouse (ab205719, 1 : 2000, Abcam) or rabbit (ab205718, 1 : 2000, Abcam) IgG. β-actin was regarded as a loading control. Finally, the bands were visualized with the Immobilon Western Chemiluminescent HRP Substrate (Millipore).
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9

Aortic LOX-1 and Macrophage Analysis

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Paraffin sections of aortas were dewaxed, rehydrated and then immunostained with anti-LOX-1 (1:100, ab60178, Abcam) to detect the expression of LOX-1. Frozen sections of the aortic roots were hydrated and immunostained with anti-MOMA-2 antibody (1:200, ab33451, Abcam) to determine the macrophage content.
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10

Histological Analysis of Mouse Knee Joint

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Mouse knee joints were used for histological evaluations. Firstly, 15% ethylenediaminetetraacetate (EDTA)-buffered saline solution was used to decalcify samples for 30 days. The samples were bathed in a graded series of ethanol solutions for dehydration and in xylene, and then embedded in paraffin blocks. They were then sectioned into 5 μm-thick slices. Paraffin-embedded samples were de-paraffinized in xylene, rehydrated using graded alcohol, and immersed in PBS. Slices were stained with H&E (Sigma-Aldrich, USA) for structural analysis of the bone matrix.
Immunohistochemistry was carried out according to a standard SABC protocol from the manufacturer. De-paraffinized slices were stained with rabbit antibodies against LOXs and goat anti-rabbit IgG/biotin (No. SP-0023; Bioss, Beijing, China). Rabbit monoclonal anti-LOX and anti-LOXL2 were purchased from Abcam (ab174316 and ab179810; Cambridge, MA, USA). Rabbit polyclonal anti-LOXL1 and anti-LOXL4 were purchased from Abcam (ab60178 and ab130646; Cambridge, MA, USA). Rabbit polyclonal anti-LOXL3 was purchased from Santa Cruz (sc-68939; Santa Cruz, CA, USA). The rehydrated samples were pretreated with 0.1% trypsin for antigen retrieval before staining. All stained slices were scanned with an inverted light microscope (Olympus-IX71, Japan) and analyzed via software (Aperio; Image Scope, USA).
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