The largest database of trusted experimental protocols

7 protocols using iwr 1

1

Modulating Zebrafish sox9b Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Splice-blocking MO (5′ TGC AGT AAT TTA CCG GAG TGT TCT C 3′) for sox9b was as 0described (Yan et al., 2005 (link)) and injected into one cell stage embryos. For chemical treatment, wild-type or tet2/3DM embryos were manually dechorionated with forceps at 24 hpf and exposed to 5-aza (75 μM, Sigma), IWR-1(10 μM, Enzo Life Sciences), TRIM (2 μM, Sigma), or SB431542 (100 μM, Stemgent) from 24 hpf to identical stages for analysis in a solution of E3 medium (5.0 mM NaCl, 0.17 mM KCl, 0.33 mM CaCl, 0.33 mM MgSO4).
+ Open protocol
+ Expand
2

Modulating Zebrafish sox9b Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Splice-blocking MO (5′ TGC AGT AAT TTA CCG GAG TGT TCT C 3′) for sox9b was as 0described (Yan et al., 2005 (link)) and injected into one cell stage embryos. For chemical treatment, wild-type or tet2/3DM embryos were manually dechorionated with forceps at 24 hpf and exposed to 5-aza (75 μM, Sigma), IWR-1(10 μM, Enzo Life Sciences), TRIM (2 μM, Sigma), or SB431542 (100 μM, Stemgent) from 24 hpf to identical stages for analysis in a solution of E3 medium (5.0 mM NaCl, 0.17 mM KCl, 0.33 mM CaCl, 0.33 mM MgSO4).
+ Open protocol
+ Expand
3

Embryo Treatment with Small Molecules

Check if the same lab product or an alternative is used in the 5 most similar protocols
BIO (Wako, Osaka, Japan), XAV939, and IWR-1 (Enzo Life Sciences, Farmingdale, NY, USA) were dissolved in dimethyl sulfoxide (DMSO). The embryos were treated with 10 μM BIO, XAV939, IWR-1, or 1% DMSO control in the dark at 28.5 °C.
+ Open protocol
+ Expand
4

Molecular Mechanisms of EMT Regulation

Check if the same lab product or an alternative is used in the 5 most similar protocols
IWR-1 was obtained from ENZO (Farmingdale, NY, USA), PI3K inhibitor LY294002 was purchased from Sigma-Aldrich (St Louis, MO, USA), and recombinant human tumor necrosis factor (TNF)-α was from R&D Systems (Minneapolis, MN, USA). Primary antibodies against E-cadherin, N-cadherin, Snail, Survivin, Vimentin, p-Akt (Ser473), t-Akt, β-catenin, and β-Actin as well as secondary antibodies conjugated to horseradish peroxidase (HRP), Alexa-594, and FITC were obtained from Cell Signaling Technology (Danvers, MA, USA). Lipofectamine 2000, SYBR Green, and the total RNA purification kit were purchased from Invitrogen (Carlsbad, CA, USA), and the RT-Premix Kit was obtained from ELPIS Biotech (Daejeon, South Korea).
+ Open protocol
+ Expand
5

IWR-1 Inhibits Wnt Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
The Wnt inhibitor IWR-1 was purchased from ENZO. Approximately 24 h before transfection, the treated ECA109 cells were plated in 6-well plates at 35–55% confluence. Cells were then transfected with the Wnt inhibitor IWR-1 at a working concentration of 10 µM, respectively, using Lipofectamine 2000 (Invitrogen; Thermo Fisher Scientific, Inc.) according to the manufacturer's protocol. After 48–72 h, the cells were collected for subsequent experiments.
+ Open protocol
+ Expand
6

Cardiac Organoid Manipulation for MMP14 Knockdown

Check if the same lab product or an alternative is used in the 5 most similar protocols
Human cardiac organoids were purchased from Novoheart (Hong Kong) and cultured with StemPro34 SFM (Invitrogen) medium supplemented with ascorbic acid (AA, 50 mg/mL; Sigma), 2 mM GlutaMAX-1 (Invitrogen), BMP4 (10 ng/mL), IWR-1 (5 mM; Enzo Life Sciences) and human recombinant activin-A (10 ng/mL; Invitrogen). The culture medium was replaced with the StemPro34 SFM medium with AA every two days70 (link). Cardiac organoids were disassembled using TrypLE express upon reaching confluence, and infected with shMMP14 lentivirus for 24 h. Cardiac organoids were subsequently selected with Puromycin (0.5 ug/ml) for one week.
+ Open protocol
+ Expand
7

Cardiac Differentiation of hUiPSCs

Check if the same lab product or an alternative is used in the 5 most similar protocols
Undifferentiated hUiPSCs were digested into smaller clusters using ACCUTASE and seeded onto Matrigel-coated plates at 3 · 105 cells/10 cm2 in mTeSR1 medium until they reached 80%–90% confluence. Thereafter, the cells were digested into single-cell suspensions and seeded into ultralow-attachment six-well plates (Corning) and cardiac differentiation was induced as described elsewhere[29 (link)]. Briefly, cells were kept for 24 hours in mTeSR1 medium with Matrigel (40 mg/mL), BMP4 (1 ng/mL; Invitrogen) and Rho kinase inhibitor (ROCK) (10 μM; R&D) under a hypoxic condition with 3% O2. Then, the first group of cells was washed and replaced in cardiogenic medium (Medium C -REAC), containing: StemPro34 SFM (Invitrogen) with ascorbic acid (AA, 50 mg/mL; Sigma), 2mM Gluta-MAX-1 (Invitrogen), BMP4 (10 ng/mL), and human recombinant activin-A (10 ng/mL; Invitrogen). The second group of cells (Medium C+REAC) was replaced in the presence of the cardiogenic medium and additionally exposed to REAC for 72 hours. On day 4 both groups of cells were incubated with IWR-1, a Wnt inhibitor (5 mM; Enzo Life Sciences). On day 8, all cells were transferred to a normoxic environment and maintained in cardiogenic medium until the end of experiment (day 14). Cardiac mesodermal cells organized in functional contracting clusters were detected as early as day 8.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!