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12 protocols using p smad2

1

Immunohistochemical Analysis of TGFβ1 and SMAD Signaling in Oral Squamous Cell Carcinoma Metastasis

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West China Hospital of Stomatology, Sichuan University, China approved the experiment as being human subject exempted. De-identified human tissue paraffin sections were used in this study. All tissues were from primary OSCC tumor biopsies from patients without prior cancer therapy. A total of 6–7 non-lung metastatic OSCCs and 7–10 lung metastatic OSCCs were used for IHC staining using primary antibodies against TGFβ1 (1:100, Abcam), p-SMAD2 (1:100, Invitrogen), or p-SMAD3 (1:100, Abcam). A total of 5–10 fields at 200× magnification were captured per OSCC sample. Quantification of area stained and the integrated optical density (IOD) of indicated markers in each image were measured by Image-Pro Plus 6.0 (Media Cybernetics). Average optical density (Hu et al., 2014 (link)) (AOD = IOD/Area) was used in this study for statistical analysis. The mean AOD of 5–10 fields was the AOD value for one OSCC sample.
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2

Immunohistochemical Staining of Frozen Tissues

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Frozen tissue sections were stained as previously described [29 (link),49 (link),50 (link)]. The following antibodies were used: rabbit polyclonal antibodies against APOBEC3G/A3G, Ki-67 (both from Abcam, Cambridge, UK, smad-2, and p-Smad2 (both from Invitrogen, Taufkirchem, Germany). Goat anti-rabbit biotinylated IgG (Vector Laboratories, Burlingame, CA, USA) was used as the secondary antibody. The positive signal was measured with ImageJ (https://imagej.net/Downloads, RRID:SCR_003070).
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3

Western Blot Analysis of Protein Expression

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Western blot analysis was performed as previously described [26 (link)] by the use of the following antibodies: rabbit polyclonal antibody against APOBEC3G/A3G (Abcam, Cambridge, UK, Cat# ab54257, RRID:AB_879556) and rabbit monoclonal antibodies against GAPDH (Cell Signaling Technology, Danvers, MA, USA, Cat# 2118, RRID: AB_561053), Ki-67 (Abcam, Cambridge, UK, Cat# ab92742, RRID: AB_10562976), Smad2 (Invitrogen, Taufkirchen, Germany, Cat# 700048, RRID: AB_2532277) and p-Smad2 (Invitrogen, Taufkirchen, Germany, Cat# 400800, RRID: AB_431599).
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4

Histological Assessment of Aortic Plaque

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Histology of the aortic root and the mid-ascending aorta for LDLR-/-Apobec1-/- mice was performed 21 days after MI or sham procedure. Blood was removed from the arterial system by infusion of isothermic buffered saline after which the aorta was perfusion-fixed. Trans-axial sections of the aortic root at the level of the sinuses were stained with Masson’s trichrome to assess the plaque area within the internal elastic lamina, and collagen content. Immunofluorescence histology was performed with anti-mouse primary mAb against Mac-2 (M3/38, Invitrogen, Waltham, Massachusetts, USA) for monocytes/macrophages, against CD41 (ab181582, Abcam, Cambridge, United Kingdom) for platelets, and against matrix metalloproteinase-9 (MMP-9) (PA5-13199, ThermoFisher). Staining for evidence of vascular cell signaling through platelet-derived TGFβ1 was performed with mAb against β-catenin (51067-2-AP, Proteintech, Rosemount, IL) and phosphorylated SMAD2 (pSMAD2) (H.205.4, Invitrogen). Secondary staining was performed with species-appropriate secondary polyclonal antibodies labeled with ALEXA fluorochromes (Fluor-488, Fluor-568, or Fluor-647) and observations were made by confocal fluorescent microscopy (TCS SP5, Leica Microsystems, Buffalo Grove, IL). Spatial extent of plaque size, collagen content, or fluorescent staining area were quantified using Image-J.
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5

Western Blot Analysis of Spinal Cord Injury

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Cells, EVs or a 0.5 cm length section of injured spinal cord (centered on the epicenter of the injured lesion) were lysed in lysis buffer on ice. Ten micrograms of collected proteins were separated by sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS‒PAGE) and transferred to a PVDF membrane. The membrane was then incubated with primary antibodies at 4 °C overnight (SMAD 7, 1:1000; p-Smad2, 1:1000, Invitrogen, USA) and with the secondary antibodies (Elabscience; 1:5000 in blocking solution) at room temperature for 1 h. The blots were then visualized using the SuperSignal West Pico enhanced chemoluminescence reagent (Advansta, USA) and quantified using ImageJ.
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6

Spinal Cord Injury Protein Analysis

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Cells or a 3-cm length section of injured spinal cord was lysed in lysis buffer on ice. Following electrophoresis, the collected proteins were transferred to a PVDF membrane and incubated overnight with primary antibodies at 4 °C (Cnpase, 1:500, Sigma, Germany; BMP2, 1:1000, Sigma, Germany; TGF-β, 1:1000, Invitrogen, USA; p-Smad2, 1:1000, Invitrogen, USA). The membrane was then incubated with the secondary antibodies (Elabscience; 1:5000 in blocking solution) at room temperature for 1 h. The blots were then visualized using the SuperSignal West Pico enhanced chemiluminescence reagent (Thermo Scientific) and quantified using ImageJ software. The full-length original gels are included in Additional file 2: Figure S2.
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7

Immunofluorescence Staining Protocol

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Tissue sections were fixed, processed, and stained as previously described [28 (link)]. Immunofluorescence was performed as previously described in detail [30 (link)]. Cultured cells were grown in chamber slides and fixed in 4% (weight/volume) paraformaldehyde for 30 min, permeabilized with 0.2% Triton X-100, blocked with 5% goat serum in phosphate-buffered saline (PBS), and stained using the same protocol as for tissue. We used specific antibodies for pSMAD1 (Millipore, St. Louis, MO), pSMAD2 (ThermoFisher Scientific), HOXD3 (Santa Cruz Biotechnology, Dallas, TX), TGFβ1 and ALK1 (R&D Systems, Minneapolis, MN), and ALK5 (Sigma-Aldrich, St. Louis, MO). The nuclei were visualized with 4′,6-diamidino-2-phenylindole (DAPI; Sigma-Aldrich).
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8

Western Blot Analysis of TGF-β Signaling

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Total cell lysates were obtained by lysing the cells in RIPA lysis and extraction buffer (Thermo Fisher Scientific). The protein concentration was determined using the Pierce BCA Protein Assay Kit (ThermoFisher Scientific). The proteins were separated using 12% SDS-PAGE gels (ThermoFisher Scientific) and transferred to nitrocellulose membrane, then incubated with the primary antibodies. The antibodies included phosphorylated (p)-SMAD1/5/8 (Millipore, diluted 1:500), p-SMAD2 (ThermoFisher Scientific, diluted 1:500), HOXD3 and GAPDH (Santa Cruz Biotechnology, diluted 1:200), ALK5 (Sigma-Aldrich, diluted 1:500), TGFβ1 and ALK1 (both from R&D Systems, diluted 1:500). After the membrane was washed three times with Tris-buffered saline with Tween 20 (TBST), it was incubated with secondary antibodies, such as goat anti-rabbit antibodies or goat anti-mouse antibodies (both from Cell Signal Technology, Danvers, MA, diluted 1:1000) or donkey anti-goat antibodies (R&D Systems, diluted 1:5000). The protein expression was normalized to β-actin in each sample.
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9

Immunohistochemical Analysis of Tumor Samples

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The dissected tumor were fixed with 4% PFA in PBS for 1 hour at 4°C, washed then incubated in 30% sucrose in PBS O/N at 4°C, then embedded in OCT (Tissue Tek). Cryosections were permeabilized, blocked and stained with the following primary Ab: Integrin a6 (rat,1:2,000, BD), RFP/mCherry (Guinea Pigs, 1:5,000, Fuchs Lab), K5 (Guinea Pigs, 1:2,000, Fuchs Lab), K10 (Rabbit, 1:2,000, Fuchs Lab), K14 (Chicken, 1:1000, Covance), mCD80 (Goat, 1:50, R&D), hCD80 (Goat, 1:50, R&D), pSMAD2 (rabbit, 1:1000, Cell Signaling), cleaved Caspase-3 (rabbit, 1:500, Cell Signaling), CD8 (Rat, 1:100, Abcam). For pSMAD2 immuno-staining, the Tyramide SuperBoost kit (Thermo Fisher) kit were used to enhance the signal. The slides were then stained with secondary Abs conjugated with Alexa 488, 546, or 647 (Life Technologies) and imaged on Zeiss Axio Observer Z1 equipped with ApoTome.2. The images were collected using Zeiss ZEN software and analyzed using ImageJ Software.
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10

Immunohistochemical Analysis of Tissue Samples

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Five-micrometer sections were deparaffinized, rehydrated, and treated in a pressure cooker with citrate buffer for antigen retrieval. Sections were incubated in primary antibodies (diluted 1:500 in blocking solution) overnight at 4°C. We used the following rabbit polyclonal antibodies: anti-GFP (Cell Signaling Technology, 2956), anti-phospho-ERK (Cell Signaling Technology, 4370), anti-β-catenin (Cell Signaling Technology, 9587), anti-cleaved Caspase 3 (Cell Signaling Technology, 9661), anti-cytokeratin 20 (Progen, GP-K20), anti-LYVE-1 (RELIATech, 103-PA50AG), anti-P53 (Vector Laboratories, CM5), anti-Ki67 (Vector Laboratories, VP-RM04), anti-TGFb1 (Proteintech, 18978-1-AP), and p-Smad2 (ThermoFisher, 44-244G). An anti-rabbit IgG HRP-linked secondary antibody (DAKO's Envision dual-link system, K4063) was used to visualize binding of primary antibody. Sections were developed with the DAB chromogen (Vector Laboratories), counterstained with Mayer's hematoxylin, dehydrated, and coverslipped with Permount.
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