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2 protocols using volume one software

1

Western Blot Analysis of SNAI1, IRS, and HMGA2

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The collected samples were first lysed in a RIPA buffer (Invitrogen, Carlsbad, CA) in strict accordance with the standard protocol recommended by the manufacturer on the product manual. Then, the sample proteins were resolved by 10% SDS-PAGE and blotted onto a NC membrane, which was blocked with 5% skim milk and incubated sequentially with primary anti-SNAI1, anti-IRS, and anti-HMGA2 antibodies as well as HRP-tagged secondary antibodies (Abcam, Cambridge, MA) in strict accordance with the incubation conditions recommended by the antibody manufacturer on the product manual. Finally, the color of protein bands was developed by making use of an ECL reagent (Invitrogen, Carlsbad, CA) in strict accordance with the standard protocol recommended by the manufacturer on the product manual and the relative expression of SNAI1, IRS, and HMGA2 proteins in each sample was calculated by using the Volume One software (Bio-Rad laboratories, Hercules, CA).
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2

Membrane Protein Extraction and Western Blot Analysis

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Membrane proteins were isolated with Mem-PER™ Plus Membrane Protein Extraction Kit (Thermo Fisher Scientific), and cytoplasmic proteins were extracted with NE-PER™ Nuclear and Cytoplasmic Extraction Kit (Thermo Fisher Scientific). We quantified the proteins with the DC Protein Assay kit (Bio-Rad, Hercules CA, USA). Denatured proteins were separated on a 10% SDS-PAGE gel and then transferred to PVDF filters (Bio-Rad). After blocking with 5% non-fat milk-TBST (Bio-Rad), the blots were incubated mouse PD-L1 antibody (Abcam), human PD-L1 antibody (Cell signaling), β-actin antibody (Cell signaling), CD63 polyclonal antibody (Abcam), or Calnexin polyclonal antibody (Abcam) at 4°C overnight, respectively. After washing 3 times with 1×TBST (Bio-Rad), the blots were incubated with peroxidase-linked secondary goat anti-rabbit IgG antibody (Bio-Rad), or goat-anti-mouse IgG antibody (Bio-Rad) were incubated for 1 h at room temperature. Finally, after incubation with SuperSignal West Pico PLUS chemiluminescent substrate (Thermo Scientific, Worcester, MA, USA), visual imaging was performed by VersaDoc™ Imaging System (Bio-Rad). Volume One software (Bio-Rad) was used for the relative quantification of blotted proteins.
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