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Anti psd 95

Manufactured by Santa Cruz Biotechnology
Sourced in United States

Anti-PSD-95 is a laboratory reagent used in biological research. It is an antibody that specifically binds to the PSD-95 protein, which is a key component of the postsynaptic density in neuronal cells. The primary function of Anti-PSD-95 is to facilitate the detection and study of PSD-95 in various experimental settings.

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11 protocols using anti psd 95

1

PSD95 Immunoprecipitation and Analysis

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PSD95 was immunoprecipitated from pooled hippocampal tissue lysate using 1:10 anti-PSD95 (Santa-Cruz) antibody coated on Pure-Proteome A/G magnetic beads (Millipore), and using vendor-supplied direct IP protocol. The immunoprecipitated fraction was purified through several washing steps with 1X IMP buffer, pH = 7.4. Finally, beads were boiled in 50ul of Laemmle Buffer at 70°C and separated on SDS PAGE, which was followed by western blot analysis.
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2

Immunofluorescence Staining of Stressed Neurons

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Cells (10,000/well) were plated on glass coverslips placed in 12-well culture dish. At about 60% confluency, cells were stressed and recovered as indicated, followed by washings with cold phosphate-buffered saline (PBS) and fixation with pre-chilled methanol:acetone (1:1 v/v) mixture for 5–10 min. Fixed cells were washed with PBS, permeabilized with 0.2% Triton X-100 in PBS for 10 min, and blocked with 2% bovine serum albumin (BSA) in PBS for 20 min. Cells were stained with anti-GFAP (Sigma), anti-NF-200 (Sigma), anti-MAP2 (Sigma), anti-PSD-95 (Santa Cruz), anti-GAP43 (Santa Cruz) and anti-γH2AX (Millipore) antibodies. Immunostaining was visualized by secondary staining with either Alexa-488 or Alexa-594 conjugated antibodies (Molecular probes). After three to four washings with 0.2% Triton X-100 in PBS (PBST), cells were overlaid with Fluoromount (Difco). Stained cells were examined on a Zeiss Axiovert 200 M microscope and analyzed by AxioVision 4.6 software (Carl Zeiss). To examine the presence of mortalin in the nucleus, images were acquired with a confocal laser scanning microscope (Zeiss LSM 700). The files were transferred to a graphic work station and analyzed with Imaris software (Bitplane, Zurich, Switzerland).
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3

Rat Brain Synapse Protein Analysis

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Fifty male Wistar rats (280–300 g) were obtained from shanghai laboratory animal center, Chinese Academy of Sciences. Four rats were kept in a cage and allowed free access to water and food. The house was maintained at 22–25°C with a 12-hr light-dark cycle.
Mouse monoclonal anti-PSD-95 (postsynaptic density protein-95) and anti-synaptophysin were respectively obtained from Santa Cruz Biotechnology (sc-32290) and Abcam Inc (ab8049). Rabbit polyclonal anti-IBA (ionized calcium binding adapter) was purchased from Wako (019-19741). Mouse monoclonal anti-GFAP (Glial fibrillary acidic protein) was purchased from EMD Millipore (MAB3402). Anti-mouse IgG, HRP conjugate was purchased from Kang Chen Biotechnology (KC-MM-035). Anti-mouse IgG-FITC and anti-rabbit IgG-Rhodamine were purchased from Jackson Biotechnology (115-095-003, 111-025-003).
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4

Molecular Mechanisms of Neuroinflammation

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Lipopolysaccharide and caffeine were purchased from Sigma-Aldrich Chemicals Company (St. Louis, MO, USA). The antibodies used in the Western blot and immunofluorescence studies were anti-Nrf2 (sc-722), anti-HO1 (sc-136,961), anti-synaptosomal-associated protein 23 (SNAP-23) sc-374,215), anti-PSD-95(sc-71,933), anti-TNF-α (sc-52,746), TLR4 (sc-16240), anti-Bax(sc-7480), anti-Bcl2 (sc-7382), anti-p-NF-kB (sc-36,548), anti-Iba-1 (sc-32,725), anti-Glial fibrillary acidic protein (GFAP; sc-33,673), and anti-β-actin (sc-7,778) (Santa Cruz Biotechnology, Dallas, TX, USA). In addition, the anti-Cleaved Caspase-3 #9664) antibodies were obtained from Cell Signaling Technology (Danvers, MA, USA). Other primary antibodies were diluted in 1× TBST (1:1000), and secondary anti-mouse horseradish peroxidase (HRP)-conjugated (Promega Ref#W402) and anti-rabbit HRP-conjugated (Promega Ref# W401) antibodies were diluted 1:10,000 in 1× TBST(Sigma, Fitchburg, WI, USA). For the confocal microscopic studies, secondary fluorescent antibodies goat anti-mouse (Ref# A11029) and goat anti-rabbit (Ref# 32732) diluted in 1× PBS were used.
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5

Fisetin and d-Galactose Neuroprotection

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Fisetin (Lot#SLBF3913V) and d-galactose (sc-202564) were procured from Sigma-Aldrich Chemical Co. (St. Louis, MO, United States). The drugs were dissolved in 0.1% dimethyl sulfoxide (DMSO) and the final volume was adjusted with normal saline (0.9% saline). The control mice were injected with normal saline.
The antibodies used in the current studies are: SIRT1 (sc-74465), anti-Nrf2 (sc-722), anti-HO-1 (sc-136,961), P-JNK (sc-625), anti-p-NF-κβ (sc-136,548), anti-Iba-1 (sc-32,725),anti-GFAP (sc-33673) anti-interleukin (IL-1β) (sc-32,294), anti-tumor necrosis factor-α (TNF-α) (sc-52,746), NOS-2 (sc-651), anti-Bax (sc-7480) anti-Bcl2 (sc-7382), cleaved Caspase-3 (sc-7272), anti-PARP-1 (sc-8007), anti-PSD-95 (sc-71,933), anti-synaptosomal-associated protein 23 (SNAP-25), and anti-β-actin (sc-47,778) (Santa Cruz Biotechnology, Dallas, TX, United States). The primary antibodies were diluted in 1× TBST (1:1,000), and secondary anti-mouse HRP (horseradish peroxidase) conjugated (Promega Ref# W402) and anti-rabbit HRP conjugated (Promega Ref# W401) were diluted 1:10,000 in 1 M TBST (Promega, Fitchburg, WI, United States); the secondary antibodies (anti-mouse Ref# A11029 and anti-rabbit Ref# 32,732) used in the immunofluorescence studies were diluted in 1:100 in 1 M PBS.
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6

Quantifying Hippocampal Synapse and Spine Density

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Rat hippocampal neurons (DIV 21) at low density were fixed by 4% PFA, permeabilized by 0.1% Triton X-100, and immuno-stained for synaptic proteins and visualized using a confocal fluorescence microscope. Anti-PSD95 (1:100; Santa Cruz Biotechnology), anti-Synapsin I (1:200; Cell signaling) antibodies and DAPI (Roche) were used. Synaptic clusters were calculated as the average number of clusters per 10 μm of dendritic length. AAV1-YFP was used to highlight dendritic spines of hippocampal neurons (DIV 21) at low density. Dendritic spines of primary and secondary basilar dendrites were counted and analyzed. Images were captured under a confocal microscope (Olympus).
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7

Evaluating Neuroprotective Targets in Neuroinflammation

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The antibodies used in the Western blot and immunofluorescence studies were anti-Nrf2 (sc-722), anti-HO1 (sc-136,961), anti-synaptosomal-associated protein 23 (SNAP-23) (sc-374,215), anti-PSD-95 (sc-71,933), anti-Syntaxin (sc-12,736), anti-tumor necrosis factor-α (TNF-α) (sc-52,746), anti-PARP-1 (sc-8007), TLR4 (sc-16240), Synaptophysin (sc-17750), anti-interleukin (IL)-1β (sc-32,294), anti-Bax (sc-7480), anti-Bcl2 (sc-7382), anti-p-NF-κB (sc-136,548), anti-Iba-1 (sc-32,725), anti-Glial fibrillary acidic protein (GFAP; sc-33,673), and anti-β- actin (sc-47,778) (Santa Cruz Biotechnology, Dallas, TX, USA). In addition, the anti-Cleaved Caspase-3 (#9664) antibodies were obtained from Cell Signaling Technology (Danvers, MA, USA). For Syntaxin and β-actin, the antibodies were diluted in TBST (1:10000) (Santa Cruz Biotechnology, Dallas, TX, USA). Other primary antibodies were diluted in 1x TBST (1:1000), and Secondary anti-mouse HRP (Horseradish peroxidase) conjugated (Promega Ref# W402) and anti-rabbit HRP conjugated (Promega Ref# W401) were diluted 1:10,000 in 1× TBST and were purchased from Promega, (Fitchburg, WI, USA). TAK242, Resatorvid (CAS 243984-11-4), the specific inhibitor of TLR4. For the confocal microscopic studies, the secondary fluorescent antibodies used were goat anti-mouse (Ref# A11029) and goat anti-rabbit (Ref# 32732) diluted in 1× PBS.
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8

Quantifying Hippocampal Synapse and Spine Density

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Rat hippocampal neurons (DIV 21) at low density were fixed by 4% PFA, permeabilized by 0.1% Triton X-100, and immuno-stained for synaptic proteins and visualized using a confocal fluorescence microscope. Anti-PSD95 (1:100; Santa Cruz Biotechnology), anti-Synapsin I (1:200; Cell signaling) antibodies and DAPI (Roche) were used. Synaptic clusters were calculated as the average number of clusters per 10 μm of dendritic length. AAV1-YFP was used to highlight dendritic spines of hippocampal neurons (DIV 21) at low density. Dendritic spines of primary and secondary basilar dendrites were counted and analyzed. Images were captured under a confocal microscope (Olympus).
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9

Comprehensive Neuronal Protein Analysis

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All chemicals, unless otherwise stated were purchased from Sigma-Aldrich (St. Louis, MO). The following primary antibodies were used: anti-PSD95 (Santa Cruz Biotechnology, Dallas, TX, catalog #SC-32290), anti-GAPDH (Santa Cruz Biotechnology, Dallas, TX, catalog #SC-25778) anti-flotillin1 (BD Biosciences, San Jose, CA, catalog #610821), anti-caveolin1 (BD Biosciences, San Jose, CA, catalog #610059), anti-α-synuclein (BD Biosciences, San Jose, CA, catalog #610787), anti-synaptophysin (Synaptic Systems, Goettingen, Germany, catalog #101011), anti-Homer (Synaptic Systems, Goettingen, Germany, catalog #160003), anti-synaptotagmin-1 (Synaptic Systems, Goettingen, Germany, catalog #105011) anti-NMDAR2a (Abcam plc, Cambridge, UK, catalog #ab133265), anti-NMDAR2b (Abcam plc, Cambridge, UK, catalog #ab28373), anti-NMDAR2b phospho S1480 (Abcam plc, Cambridge, UK, catalog #ab73014), anti-PKA (Santa Cruz Biotechnology, #sc-390548), and anti-GluA1 (Abcam plc, Cambridge, UK, catalog #ab32436). Syn peptides (amino acids 12–23 and 34–45) were obtained from Primmbiotech.
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10

Antibody Characterization for Glutamate Receptor Subunits

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Anti-GluK3 antibody raised in rabbit against C-terminal 17 amino acid residues of mouse GluK3 (903–919, NM_001081097) was used for immunohistochemistry, immunoprecipitation, and western blotting. The rabbit polyclonal antibodies anti-GluK2 (Synaptic Systems, 180 003), anti-GluK441 (link), and anti-GluK5 (Millipore, 06-315) were used for immunoprecipitation and western blotting. The specificities of these antibodies have been determined previously29 (link). Anti-GluN1 (BD Biosciences, 556308), anti-GluN2A (BD Biosciences, 612286), anti-GluN2B (BD Biosciences, 610416), anti-GluA1 (Frontier Institute, Japan, MSFR102270), anti-GluA2 (Millipore, MAB397), anti-GluA344 (link), anti-PSD-95 (Santa Cruz Biotechnology, SC32290), anti-D1R (Frontier Institute, Japan, MSFR101030), and anti-D2R (Frontier Institute, Japan, MSFR101060) were used for western blotting.
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