The largest database of trusted experimental protocols

37 protocols using streptavidin apc cy7

1

Comprehensive Immunophenotyping Panel

Check if the same lab product or an alternative is used in the 5 most similar protocols
Alexa Fluor 488 NK1.1 (PK136), Biotin-CD4 (GK1.5), Alexa Fluor 488-CD4 (GK1.5), APC-eFluor 780-CD4 (GK1.5), FITC-CD3ε (17A2), Alexa Fluor 647-CD3ε (17A2), Alexa Fluor 488-CD206, Brilliant Violet 421-CD3ε (17A2), FITC-F4/80, Alexa Fluor 488-CD3ε (145-2C11), Alexa Fluor 647 CD49b (DX5), Pacific Blue-CD49b (DX5), PE-NK1.1 (PK136), Brilliant Violet 421 NK1.1 (PK136), PE/Cy5-CD4 (GK1.5), APC-TCRγδ (GL3), Biotin-IFN-γRα (2E2), Brilliant Violet 421-CD25 (PC61), PE-CD25 (PC61), Biotin-CD122 (5H4), PE/Cy7-IFN-γ (XMG1.2), PE-GM-CSF (MP1-22E9), Pacific Blue-TNF-α (MP6-XT22), PercCP/Cy5.5-CD69, Biotin-BrdU (Bu20a), FITC-Ki67 (16A8), Alexa Fluor 647-streptavidin, APC-Cy7-Streptavidin, PE-Cy7-Streptavidin, Brilliant violet 421-CD62L (MEL-14) and rabbit polyclonal anti-Asialo-GM1 (aGM) antibodies were purchased from Biolegend (San Diego, CA). APC-RORγt (AFKJS-9), APC-T-bet (4B10) and PE/Cy7-T-bet (4B10) were procured from eBioscience (San Diego, CA). Anti-NK1.1 (PK136), anti-F4/80 (Cl:A3–1), anti-Gr1 (RB6-8C5) and isotype control antibodies for in vivo use were procured from BioXcell (West Lebanon, NH). Alexa Fluor 647-labeled CD1d tetramer (mCD1d, PBS-57) and unloaded control tetramer were received from NIH Tetramer Core Facility (Atlanta, GA). 5-Bromo-2′-deoxyuridine (BrdU) was purchased from Sigma-Aldrich.
+ Open protocol
+ Expand
2

Isolation of Skeletal Stem Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
All limbs were collected from 8-week-old mice that had been subjected to tamoxifen and all muscles and ligaments removed. Cleaned bones (i.e., whole bone preparation) were gently disrupted using a mortar and pestle, minced, and digested in 2.5 mg/mL collagenase I (#CLS-1, Worthington). Collected cells were subjected to RBC lysis and blocked with 3% BSA, 2% FCS in PBS. The following antibodies were used: anti-CD45 (#103131, BioLegend, 1:80), anti-Ter119 (#116227, BioLegend, 1:80), anti-CD31 (#562861, BD Pharmingen, 1:80), anti-CD200 (#ab33735, Abcam, 1:10), APC/Cy7 Streptavidin (#405208, BioLegend, 1:300) and DAPI (#D9542, Sigma-Aldrich). Cells were sorted on FACSFusion or LSR Fortessa (BD Biosciences) based on forward and side scatter plots, single cells, live cells (DAPI negative), trilineage expression (CD45-Ter119-CD31-) and lineage reporter positive fluorescence.
+ Open protocol
+ Expand
3

Multiparameter Flow Cytometry Staining

Check if the same lab product or an alternative is used in the 5 most similar protocols
Staining was performed with hybridoma supernatant 2.4G2 Fc block (ATCC HB197) in FACS staining buffer at 4°C. The following antibodies were purchased from Biolegend: biotin-anti-CD11c (N418), Brilliant Violet 650 anti-CD11c (N418), PE-anti-CD11b (M1/70), PE-anti-CD3 (17A2), PE-anti-CD8 (53–6.7), PE-anti-Gr-1 (RB6-8C5), PE-anti-CD19 (eBio1D3), PE-anti-TER119 (TER-119), PE-anti-Thy1.1 (HIS51), PE-anti-NK1.1 (PK136), APC-anti-B220 (RA3-6B2), FITC anti-TLR9 (M9.D6), Brilliant Violet 421 anti-B220 (RA3-6B2), PerCP-eFluor710-anti-Siglec-H (eBio440c), PerCP-eFluor710-anti-c-Kit (2B8), APC-anti-M-CSFR (AFS98), PE/Cy7-anti-IL-7Rα (A7R34), FITC-anti-Sca-1 (D7). PE-anti-MHCII (NIMR-4) and FITC-anti-MHCII (NIMR-4) were purchased from eBioscience, and FITC-anti-IFNα (RMMA-1) was purchased from PBL Assay Science. APC-Cy7-Streptavidin was used as the secondary antibody (Biolegend). Flow data were analyzed with FlowJo (FLOWJO LLC) software.
+ Open protocol
+ Expand
4

Surface Marker Analysis of Immune Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
For surface markers analysis, live cells were re-suspended in 1 × PBS and stained with anti-mouse CD45 (30-F11, Biolegend), CD11b (M1/70, R&D Systems), F4/80 (BM8, Biolegend), CD86 (GL-1, Biolegend), MHC-II (M5/114.15.2, Biolegend), CD117 (2B8, Biolegend), CD115 (AFS98, Biolegend), CD16/32 (93, Biolegend), CD34 (HM34, Biolegend), Sca1 (D7, Biolegend), SIRPα (P84, biolegend), Lin (Stem Cell), and APC-Cy7 Streptavidin (Biolegend) at 4°C for 30 min. The concentration at each antibody was used as the product protocol recommended. For intracellular cytokine staining, cells were fixed and permeabilized with Fixation and Permeabilization Kit (eBioscience) at room temperature for 40 min and labeled with anti-mouse CD206 (C068C2, Biolegend). Multicolor FACS analysis was performed on an LSR Fortessa Analyzer (BD Biosciences). All data analysis was performed using the flow cytometry analysis program FlowJo-V10.
+ Open protocol
+ Expand
5

Osteoclastogenesis Regulation by Key Factors

Check if the same lab product or an alternative is used in the 5 most similar protocols
Recombinant mouse M-CSF, GM-CSF, IL-4, and RANKL were purchased from BioLegend (San Diego, CA). AF488-phalloidin was purchased from Invitrogen (Carlsbad, CA). Antibodies for immunoblot assays were obtained against NFATc1 (Pierce, Rockford, IL); Oscar (R&D Systems, Minneapolis, MN); TRAP (BioLegend); Integrin β3; c-Fos; cleaved Caspase-3, -8, and -9; and cleaved PARP (Cell Signaling Technology, Mountain View, CA). The previously described anti-Ninj1 Ab1-1518 (link) was used for immunoblotting assays. For FACS analysis, Fc block, and PE-anti-mouse CD115, APC-anti-mouse CD117, and V450-anti-mouse CD11b antibodies were purchased from BD Biosciences (Bedford, MA), and biotin-anti-RANK antibody and APC/Cy7 streptavidin were obtained from BioLegend.
+ Open protocol
+ Expand
6

Multicolor Flow Cytometric Profiling of Immune Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Single cell suspensions prepared from lungs, BLNs, spleens and bronchoalveolar lavage were stained with the indicated combinations of Alexa Fluor 780-conjugated anti-CD4 (RM4–5, eBioscience), anti-CD8-PEcy7 (53-6.7, BioLegend), biotinylated anti-ICOS (7E.17G9, BioLegend), biotinylated anti-CD43 (1B11, BioLegend) and APC/cy7streptavidin (BioLegend). For intracellular cytokine staining, cells were stimulated for 2 hours with phorbol 12-myristate 13-acetate (PMA) (0.1 µg/ml, Cat#p1585, Sigma) and ionomycin (1 µg/ml, Cat#I0634, Sigma) and with golgi stop (Brefeldin) (5 µl/ml, Cat#B7651, Sigma) for 2 hours, followed by permeabilization with NP-40 (igepal CA-630, Sigma) and staining with anti-IFNγ-APC (XMG1.2, BioLegend). Intracellular FoxP3 expression was determined using the FoxP3 staining buffer kit (FJK-16s, eBioscience) according to the manufacturer’s recommendations. For apoptosis assay, Annexin/7AAD staining was performed as described previously [35] (link). Flow cytometric analysis was performed using a FACSCanto or LSRFortessa (BD Biosciences) running with THE FACSDiva software (version 6.1.3) (BD Biosciences). Analysis was performed using FlowJo version 9.5.3 (Tree star, Inc.).
+ Open protocol
+ Expand
7

Multiparametric analysis of hematopoietic cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Single cell suspensions were prepared from bone marrow and spleen cells as previously described19 (link). APC-c-kit, PE-Cy7-Sca-1 and Pacblue-Ki67 antibodies were purchased from eBioscience. APC-Cy7-Streptavidin, FITC-CD45.1 and APC-CD45.2 antibodies were purchased from Biolegend. The bone marrow biotin lineage panel and 7AAD/annexin-V staining kit were purchased from BD Pharmingen. All flow samples were analyzed by Canto-II or Fortessa flow cytometer and sorted by Aria-II cell sorter (Becton Dickinson).
For phospho-Flow, bone marrow cells were stimulated with or without a cytokine cocktail, containing murine IL-3 (PeproTech) 10ng/mL, murine IL-6 (PeproTech) 10ng/mL, murine SCF (PeproTech) 100ng/mL, and murine GM-CSF (BioLegend) 200 ng/mL for 15 minutes. Cells were then fixed in 1.5% paraformaldehyde (Electron Microscopy Sciences) at 37 °C for 10 minutes and permeabilized on ice with Methanol for 15 minutes. Subsequently, cells were stained with antibodies to cell surface markers as well as to pERK1/2 (T202/Y204), pSTAT3 (Y705), pSTAT5 (Y694), pAKT (S473) or IgG isotope control for 30 minutes at room temperature, before being subjected to FACS analysis. All phospho-specific antibodies were purchased from eBiosciences and are PE-conjugated.
+ Open protocol
+ Expand
8

Immunophenotyping of Bone Marrow DCs

Check if the same lab product or an alternative is used in the 5 most similar protocols
Bone marrow-derived DCs were incubated on ice with fluorochrome- or biotin-conjugated CD11b, CD11c, and AF6-88.5 antibodies diluted in PBS with 2% FCS. APC/Cy7-streptavidin (Biolegend) was used as a secondary reagent and 7-AAD (5 μl/sample) to discriminate live and dead cells. BD FortessaTM and fluorescence-activated cell sorting (FACS) ARIA-IITM machines were used for cell analysis and sorting, respectively.
+ Open protocol
+ Expand
9

Flow Cytometry Analysis of Reprogrammed Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells from standard reprogramming, Colony Forming Unit (CFU), or LTC experiments were first harvested using trypLE express at specified days and washed with PBS supplemented with 5% FBS and 1mM EDTA. Flow cytometry analysis was performed on a 5-laser LSRII with Diva software (BD Biosciences) and analyzed with FCS Express 6 Flow Research Edition (Win64). Cells were stained with PE/CY7-hCD45 (2D1), FITC-hCD235a (GA-R2), APC-hCD41 (MReg30), BV421-hCD14 (M5E2), BV421-hCD34 (581), APC-hCD45 or FITC-hCD45 (2D1), PE-hEPCR (RCR-401), or APC-hCD49f (GoH3) (all Biolegend), as well as PE-hACE (BB9), FITC-hCD90 (5E10), PE-hCD49f (GoH3) (BD Biosciences), APC-hCD90 (5E10, Thermo Fisher), or hACE-Biotin (BB9, R&D Scientific Corporation) with APC-Cy7 Streptavidin (BioLegend). 4,6-diamidino-2-phenylindole (DAPI, 1ug/mL, Sigma) or Propidium Iodide (PI, 1ug/ml, R17755, Invitrogen) was added prior to analysis to exclude dead cells. Sorting for RNA sequencing, transplants, LTC, and CFU assays was performed with APC-CD49f alone, PE-CD49f alone or BV421-CD34 and PE-CD49f using DAPI or PI to exclude dead cells.
+ Open protocol
+ Expand
10

Comprehensive Thymocyte Immunophenotyping

Check if the same lab product or an alternative is used in the 5 most similar protocols
Anti-CD4–Horizon V450, anti-CD4–FITC, anti-CD8–FITC, anti-CD8–Alexa647, anti-CD24–PE, anti-CD25–Alexa700, anti-CD25–APC-Cy7, anti-CD44–Horizon V450, anti-CD44–PE-Cy7, anti-CD45.1–Pacific Blue, anti-CD45.2–PE-Cy5, anti-CD117–PE-Cy7, anti-Sca-1–Alexa700, anti-TCRβ–PE, anti-TCRβ–PE-Cy5, and anti-Ter119–FITC were purchased from BioLegend (San Diego, CA) or BD Biosciences (San Jose, CA). Lineage markers were identified using biotinylated anti-Ter119, anti-CD11b, anti-Gr-1, anti-CD3ε, and anti-B220 followed by streptavidin-APC-Cy7 (Biolegend). Cell labeling was performed in PBS containing 2 % FCS. To quantify the number of thymocytes and mast cells, CountBright™ beads (Life Technologies, Grand Island, NY) were added.
Flow cytometry studies were performed using a BD LSR II (BD Immunocytometry Systems, San Jose, CA). Data were analyzed using BD FACSDiva software (BD Biosciences, San Jose, CA). Thymocytes were gated on the live lymphocyte gate, and doublet discrimination was performed. Thymocytes were gated on the Ter119CD45+ population.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!