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6 protocols using ab190377

1

Confocal Microscopy Evaluation of HMGB1 Translocation in SAH

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Confocal microscopy was used to observe HMGB1 translocation after SAH. Brain sections were prepared as described in the immunohistochemistry. Following rehydration, sections were incubated with 0.2% Triton X-100 in PBS for 5 min at room temperature and washed with PBS 3 times for 5 min. Sections were placed in 10 mmol/l citrate buffer (pH 6.0) and heated in the microwave oven at 95°C for 30 min. Sections were cooled at room temperature for 20 min and rinsed in PBS. Nonspecific protein binding was blocked by incubation in 5% bovine serum for 40 min. Sections were incubated with primary rabbit anti-HMGB1 (1:200; ab190377; Abcam) overnight at 4°C, followed by washing with PBS 3 times for 5 min. Sections were incubated with goat anti-rabbit secondary antibody (1:100) conjugated with fluorescein isothiocyanate and tetramethylrhodamine (cat. no. ZF-0311; Beijing Zhongshan Golden Bridge Biotechnology, Beijing, China) at 37°C for 1 h. The cell nucleus was stained with 4,6′-diamidino-2-phenylindole, dihydrochloride (1:1,000; Sigma-Aldrich; Merck KGaA). Immunofluorescence was detected using a laser scanning confocal microscope (Olympus FV10-ASW; Olympus Corp., Tokyo, Japan).
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2

Protein Complex Immunoprecipitation and Western Blot

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The cell lysates (0.5–1 mg of total protein) were immunoprecipitated with anti-HMGB1 (Abcam), or anti-NOD2 (Santa Cruz) at 4 °C overnight on protein A-Sepharose beads. The bead-bound complexes were pelleted, washed several times with lysis buffer, and boiled with a SDS sample buffer for 5 min prior to SDS-PAGE. For the Western blot analysis, the proteins were transferred to PVDF membranes after SDS-PAGE and blocked with 5% non-fat dry milk. The blots were incubated with specific primary antibodies, such as anti-HMGB1 (1:2000; ab190377, Abcam,), anti-NOD2 (1:1000; DF12125, Affinity Bioscience), or anti-ATG16 (1:2000; 8089, Cell Signaling Technology), overnight at 4 °C. The signals were detected, using a chemiluminescence kit (Merck Millipore).
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3

Co-Immunoprecipitation Protocol for Protein-Protein Interactions

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Co-IP was conducted as previously described [25 (link)]. Cells were lysed with a lysis buffer (50 mM Tris, pH 7.4, 150 mM NaCl, 0.2 mM EDTA, 2 mM EGTA, 0.5% Igepal CA-630, 10% glycerol, 1 mM sodium vanadate) supplemented with a protease inhibitor (Cat. No. 4693132001, Roche, Basel, Switzerland) and a phosphatase inhibitor (Cat. No. 4906837001, Roche). The lysate was clarified by centrifugation at 14,000× g for 5 min at 4 °C. The supernatant was transferred to a new tube and incubated with antibodies against HMGB1 (Cat. No. ab190377, Abcam, Cambridge, UK) or RPS3 (Cat. No. ab140688, Abcam), followed by incubation with DynabeadsTM protein G (Cat. No.10003D, Invitrogen). The final pellet from IP was subjected to elusion with the Laemmli sample buffer or 100 mM glycine solution, pH 3.0. The IP samples were subjected to immunoblotting with antibodies against phosphorylated serine (p-Ser) (Cat. No. ab9332, Abcam), phosphorylated threonine (p-Thr) (Cat. No. ab9337, Abcam), HMGB1 (Cat. No.ab79823, ab190377, Abcam), RPS3 and GFP (Cat. No. ab13970, Abcam), respectively.
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4

Immunofluorescence Analysis of BV2 Cells

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The BV2 cells were washed once with ice-cold phosphate-buffered saline (PBS) and fixed with 4% paraformaldehyde (Sigma Aldrich, St. Louis, MO, USA) for 20 min. Fixed BV2 cells were blocked and permeabilized with 1% goat serum and 0.1% Triton X-100 in PBS, followed by incubation with primary antibodies for anti-light chain 3 (LC3; 1:200; PM036, MBL, Woburn, MA, USA) and anti-HMGB1 1:200; ab190377, Abcam, Cambridge, UK) at 4 °C overnight. For the double immunostaining, FITC ant-rabbit IgG (Merck Millipore, Burlington, MA, USA) or rhodamine anti-mouse IgG (Merck Millipore) was used as the secondary antibody and incubated for 1 h at room temperature. The cells were counterstained with DAPI (Merck Millipore) to visualize the nuclei and then observed under a fluorescence microscope (Axio Observer; Zeiss, Oberkochen, Germany).
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5

Immunohistochemical Analysis of Inflammatory Markers

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The slices were subjected to immunohistochemical staining. After the cells were fixed with 4% paraformaldehyde for 30 min, they were permeabilized with 0.3% Triton X-100 for 30 min. Then, the slices were blocked with 5% bovine serum albumin (BSA) at 37 °C for 90 min. The slices were incubated with primary antibodies against Caspase 1 (1:300, 22915-1-AP, Proteintech, USA), NLRP3 (1:300, 19771-1-AP, Proteintech, USA), HMGB1 (1:200, ab190377, Abcam, UK) and ionized calcium-binding adaptor molecule-1 (IBA-1) (1:50, 10904-1-AP, Proteintech, USA) at 4 °C overnight. The slices were incubated with secondary antibodies at 37 °C for 60 min. The slices were then preserved in glycerin buffer and observed under fluorescence microscopy.
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6

Quantitative Western Blot Analysis of Retinal Proteins

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The retina was harvested and homogenized in lysis buffer containing protease and phosphatase inhibitor mini tablets (Thermo Fisher Scientific, Waltham, MA). Nuclear expression of HMGB1 was detected in the nuclear fractions extracted by the NE‐PER Nuclear and Cytoplasmic Extraction Reagents (Thermo Fisher, No. 78833). The protein concentration was determined with bicinchoninic acid protein assay. Equal amounts of protein were loaded, and western blotting was performed as previously described.29 The band intensities were measured using the Image J software. Primary antibodies included ZO‐1 antibody (Invitrogen, 339 100), vascular endothelial‐cadherin antibody (Cell Signaling Technology, #2158), claudin‐5 antibody (Santa Cruz, sc‐374 221), (platelet derived growth factor receptor beta) PDGFR‐β antibody (Santa Cruz, sc‐374 573), HMGB1 antibody (Abcam), RAGE antibody (Abcam, ab30381), nuclear factor kappa B (NF‐κB) antibody (Abcam, ab32536), TLR4 antibody (Abcam, ab190377), tumor necrosis factor alpha (TNF‐α) antibody (Abcam, ab183218), interleukin (IL)‐1β antibody (Abcam, ab234437), and intercellular adhesion molecule 1 (ICAM‐1) antibody (Abcam, ab222736). β‐actin antibody (Abcam, ab6276) was used as the loading control. The assays were independently repeated three times for statistical analysis.
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