6 μl of purified protein (I53-50-v0, I53-50-v1, I53-50-v2,
I53-50-v3, I53-50-v4, I53-50-Btat, I53-47-v0, I53-47-v1, I53-47-Btat) at 0.04
– 0.3 mg/mL were applied to glow discharged, carbon-coated 300-mesh
copper grids (Ted Pella), washed with Milli-Q water and stained with
0.75% uranyl formate as described previously
27 . Screening and sample optimization was
performed on a 100 kV
Morgagni M268 transmission electron microscope (FEI)
equipped with an
Orius charge-coupled device (CCD) camera (Gatan). Data were
collected with Leginon automatic data-collection software
28 (link) on a 120 kV Tecnai G2 Spirit
transmission electron microscope (FEI) using a defocus of 1 μm with a
total exposure of 30 e-/A
2. All final images were recorded using an
Ultrascan 4000 4k × 4k CCD camera (Gatan) at 52,000×
magnification at the specimen level. For data collection used in two-dimensional
class averaging, the dose of the electron beam was 80 e-/Å
2,
and micrographs were collected with a defocus range between 1.0 and 2.0
μm. Coordinates for unique particles (7,979 for I53-50-v0 and 7,130 for
I53-50-v4) were obtained for averaging using EMAN2
29 (link). Boxed particles were used to obtain
two-dimensional class averages by refinement in EMAN2.
Butterfield G.L., Lajoie M.J., Gustafson H.H., Sellers D.L., Nattermann U., Ellis D., Bale J.B., Ke S., Lenz G.H., Yehdego A., Ravichandran R., Pun S.H., King N.P, & Baker D. (2017). Evolution of a Designed Protein Assembly Encapsulating its Own RNA Genome. Nature, 552(7685), 415-420.