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3 protocols using mini protean tgx precast 4 20 gradient gels

1

Standardized Extracellular Vesicle Protein Analysis

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sEV samples were lysed in non-reducing conditions in Laemmli buffer, heated for 5 min at 95°C, and loaded on mini protean TGX precast 4-20% gradient gels (Biorad) in Tris-glycine buffer for electrophoresis at 110 V for 2 h. Proteins were electro-transferred onto nitrocellulose membranes using the trans-blot turbo transfer system (Biorad) and membranes were blocked with Odyssey blocking buffer (Li-Cor Biosciences) for 1 h. Membranes were then incubated with primary antibodies: mouse anti-CD81 (200 ng/ml, Santa-Cruz), mouse anti-CD63 (500 ng/ml, BD Pharmingen) or mouse anti-CD9 (100 ng/ml, Millipore) overnight at 4°C in Odyssey blocking buffer, followed by incubation with the secondary antibody IRDye 700 goat anti-mouse IgG (Li-Cor Biosciences), for 1 h at room temperature. Membranes were washed three times in TBS 0.1% Tween 20 during 10 min after each incubation step and visualized using the Odyssey Infrared Imaging System (LI-COR Biosciences).
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2

Protein Isolation from Cells and EVs

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Protein was isolated from both cell (crude lysate) and EV (peak fraction) samples. Lysates were prepared in RIPA buffer (Cell Signaling Technology, Danvers, MA, USA) supplemented with phosphatase and protease inhibitors (Roche, Basel, Switzerland), and sonicated on ice for 20 seconds at 20% amplitude using a VibraCell VCX500 sonicator (Sonics & Materials Inc., Newtown, CT, USA). Lysates were gently mixed for 1 h at 4°C, after which they were centrifuged for 10 min at 20,000 x g at 4°C. Supernatants were transferred to clean tubes and pellets discarded. Protein concentrations were determined using the BCA assay (Pierce, Thermo Fisher Scientific, Inc.). 15 μg of protein, mixed with Laemmli sample buffer (Bio-Rad Laboratories, Inc., Hercules, CA, USA) without reducing agent, was loaded unto Mini-protean TGX precast 4–20% gradient gels (Bio-Rad) and separated by SDS-PAGE. Next, protein was blotted onto PVDF membranes (EMD Millipore) prior to antibody incubation and fluorescent imaging as performed with dot blots.
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3

SDS-PAGE Protein Separation and Transfer

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Proteins were separated using a Mini-PROTEAN 3 Electrophoresis System (Bio-Rad). To each sample, an equal volume of Laemmli sample buffer (Bio-Rad) and 2 μL of 2-mercaptoethanol (Sigma-Aldrich) per 50 μL of sample was added. Samples were heated to ~100°C for 5 min and loaded into the wells of Mini-PROTEAN® TGX™ precast 4–20% gradient gels (Bio-Rad) immersed in Tris/glycine buffer (2.5 mM Tris, 19.2 mM glycine, pH 8.3). One well in each gel was loaded with 6 μl of molecular weight marker (Bio-Rad). To allow comparisons between the protein content of samples run on different gels, at least one well per gel contained a protein sample common to all gels (internal standard). Proteins were separated electrophoretically at 100 V for 100 min at room temperature. After separation, the proteins were transferred to nitrocellulose membranes (pore size 0.22 μm; LI-COR, NE, USA) using a Mini Trans-Blot® Electrophoretic Transfer Cell (Bio-Rad). Each tank was filled with Tris/glycine buffer containing 20% (v/v) methanol and transfers were carried out overnight at 30 V and 4°C. After staining with ponceau red (Sigma-Aldrich) to confirm protein transfer was successful, the membranes were washed 3× with distilled water and air dried for 1 h at room temperature.
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