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Proteome profiler mouse array panel a kit

Manufactured by R&D Systems
Sourced in United States

The Proteome Profiler Mouse Array Panel A kit is a multiplex array that allows for the simultaneous detection and quantification of 40 mouse proteins related to immune response, inflammation, and tissue remodeling. The kit provides a platform for the analysis of protein expression profiles in mouse samples.

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3 protocols using proteome profiler mouse array panel a kit

1

Functional Cytokine Profiling of Tumor Samples

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The frozen tumors were homogenized, and the total proteins were extracted as described above. Functional markers of tumors treated with PBS or OAd-MSCs were analyzed by cytokine array assay following manufacturer’s indications (Proteome Profiler Mouse Array Panel A kit, ARY006; R&D Systems, Minneapolis, MN, USA). Cytokine expression was measured semi-quantitatively by pixel density of duplicated spots using ImageJ software. Differentially expressed proteins were further studied with STRING software to analyze the biological process in which they are involved.
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2

Tumor Protein Extraction and Cytokine Analysis

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Tumor samples were mechanically and chemically disaggregated with radioimmunoprecipitation assay buffer and sonicated on ice. 20–50 µg of total protein were loaded on SDS‐PAGE gels and transferred to polyvinylidene difluoride membranes (Invitrogen, Thermo Fisher Scientific). Membranes were incubated overnight at 4°C with the primary antibodies biotin anti-CD45 (clone 30F11, Affymetrix), andhorseradish peroxidase (HRP)-conjugated anti-TATA-box binding protein (TBP). Membranes were washed with 0.1% PBS‐Tween 20 and stained using anti-CD45 with DAB solution (SK-4100, Vector Laboratories) for 15 min. Proteins were detected using Immobilon Western Chemiluminescent HRP Substrate (Millipore, Burlington, Massachusetts, USA) and images were acquired using ChemiDoc MP Imaging System (Biorad).
Extracted proteins from the tumor samples were also used to study the pro-inflammatory cytokines in the tumor microenvironment. Three hundred micrograms of protein from a pool of three tumors per group were used to perform the cytokine array assay following manufacturer’s indications (Proteome Profiler Mouse Array Panel A kit, ARY006, R&D Systems, Minnesota, USA). Cytokine expression was measured semi-quantitatively by pixel density of duplicated spots using ImageJ software.
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3

Secretome and Systemic Inflammation of OAd-MSC

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To study the secretome of MSCs and OAd-MSC, 4 × 104 cells per well were seeded in 24-well plates with complete DMEM. After 24 hours, supernatants were collected and proinflammatory cytokines were analyzed using Proteome Profiler Mouse Array Panel A kit (R&D Systems). Cytokine expression was measured semiquantitatively by pixel density of duplicated spots using ImageJ software. Quantification of CXCL10 was confirmed using Mouse CRG-2/IP-10 Ray Bio ELISA Kit (RayBiotech). Differentially expressed proteins were further studied with the STRING (Search Tool for Recurring Instances of Neighbouring Genes) database to analyze the biological process in which they are involved. STRING is a tool that retrieves and displays all known and predicted associations between proteins, including both physical interactions as well as functional associations (19, 20 (link)).
To study the systemic proinflammatory status of mice treated with OAd-MSC, blood samples were acquired 48 hours after treatment administration and serum was obtained following standard protocol. Proinflammatory cytokines were analyzed and measured semiquantitatively as explained above.
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