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8 protocols using cd27 o323

1

Multiparameter Flow Cytometry of Macaque Immune Cells

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The following fluorochrome conjugated monoclonal antibodies reactive with macaque cells were used for flow cytometry studies: CD3 (SP34-2, BD Biosciences [BD]), CD4 (L200, BD), CD8 (SK1, BD), CD95 (DX2, BD), CD28 (CD28.2, BioLegend), CCR5 (3A9, BD), CXCR5 (MU5UBEE, Invitrogen), PD-1 (EH12.2H7, BioLegend), ICOS (C398.4A, BioLegend), CCR7 (150503, BD), α4β7 (A4B7, NHP Reagent Resource), LAG3 (3DS223H, eBioscience), Tim-3 (F38-2E2, BioLegend), TIGIT (MBSA43, Invitrogen), CD20 (2H7, BioLegend), CD19 (J3-119, Beckman Coulter), HLA-DR (L243, BioLegend), CD10 (HI10A, BioLegend), CD21 (B-ly4, BD), CD27 (O323, BioLegend), IgD (IADB6, Southern Biotech), IgG (G18-145, BD), IL-21R (2G1-K12, BioLegend), Ki-67 (B56, BD), BCL6 (IG191E/A8, BioLegend), CD80 (2D10, BioLegend), CD56 (B159, BD), CD45 (D058-1283, BD), CD14 (MoP9, BD), CD16 (3G8, BD), CCR2 (48607, R&D Systems), CD11b (ICRF44, BioLegend), CD11c (3.9, Invitrogen), PD-L1 (29E.2A3, BioLegend), PD-L2 (24F.10C12, BioLegend), CD80 (2D10, BioLegend), CD86 (FUN-1, BD), CD141 (1A4, BD), CD163 (GHI/61, BioLegend), and CD123 (7G3, BD).
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2

Multicolor Flow Cytometry of PBMCs and Lung Lymphocytes

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Monoclonal antibodies used to stain human PBMCs were from BioLegend CD27 (O323), CD8α (RPA-T8), CD3 (OKT3), IFN-γ (4S.B3), TNFα (MAb11), and BD Biosciences CD4 (RPA-T4). Monoclonal antibodies used to stain lung-derived murine lymphocytes were BioLegend CD3 (17A2), CD8α (53–6.7), CD4 (RM4–5); eBioscience CD11b (M1/70), CD44 (IM7); and BD Biosciences IFN-γ (XMG1.2). Samples were run on a BD Biosciences LSRII flow cytometer and analyzed with FlowJo software.
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3

Surface Staining for Immune Cell Phenotyping

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Cells were surface stained as described (17 (link)) with antibodies to CD4 (RPA-T4), CD8 (SK1), CD3 (OKT3), CD14 (61D3), CD16 (3G8), CD19 (HIB19), CD57 (HNK1), CD45RA (HI100), and CD27 (O323) from BioLegend (San Diego, CA, USA) and Abcam (Cambridge, UK) and Zombie Aqua dye (BioLegend, San Diego, CA). For sorting, cells were in PBS with 0.5% bovine serum albumin and 2 mM EDTA. Single color compensation controls were prepared as described (17 (link)).
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4

Isolation and Immunophenotyping of PBMCs

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We isolated peripheral blood mononuclear cells (PBMCs) from the blood samples using density-gradient centrifugation on Sepmate and RosetteSep DM-L Density Medium (Stemcell Technologies, Grenoble, France). Isolated PBMCs were stained for flow cytometry with antibodies (Abs) against CD3 (SK7; BD Biosciences, San Diego, CA), CD4 (SK3; BD Biosciences), CD45RA (HI100; Biolegend, San Diego, CA), CXCR5 (J252D4; Biolegend), CD19 (HIB19; Biolegend), CD27 (O323; Biolegend), or CD38 (HIT2; Biolegend) for 30 min at 4 °C. Stained cells were analyzed by multiparameter flow cytometry (FACS Verse, BD Biosciences) using FlowJo ver. 10 software (BD Biosciences).
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5

Multiparameter Cell Immunophenotyping

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Cells were surface stained as described (21 (link)) with antibodies to CD4 (RPA-T4), CD8 (SK1), CD3 (OKT3), CD14 (61D3), CD16 (3G8), CD19 (HIB19), CD57 (HNK1), CD45RA (HI100), and CD27 (O323) from BioLegend (San Diego, CA, USA) and Abcam (Cambridge, UK) and Zombie Aqua dye (BioLegend, San Diego, CA). For sorting, cells were resuspended in PBS with 0.5% bovine serum albumin and 2 mM EDTA, then filtered through 35 μm nylon mesh into 5 mL round bottom tubes (Corning, Corning, NY, USA).
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6

Tonsillar Mononuclear Cell Organoid Assay

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Excised tonsils from three de-identified immunocompetent patients were diced and strained through a 100-μm filter. A single cell suspension of tonsillar mononuclear cells (MNCs) was created with Ficoll density gradient separation. Once isolated, MNC were counted and resuspended in organoid media (RPMI with L-glutamine, 10% FBS, 2 mM glutamine, 1X penicillin-streptomycin, 1 mM sodium pyruvate, 1X MEM non-essential amino acids, 10 mM HEPES buffer and 1 μg/ml of recombinant human B cell activating factor [BioLegend]) at a concentration of 6 × 107 cells per ml. As previously described by Wagar et al. [32 (link)], MNC’s were transferred to permeable transwells (0.4-μm pore, 12-mm diameter; Millipore). transwells were inserted into standard 12-well polystyrene plates containing 1 ml of additional organoid media and placed in an incubator at 37 °C and 5% CO2. Lometrexol in phosphate-buffered saline was added, or not, to organoids after 48 h in culture. Organoid media with or without lometrexol was replaced every 3 days. On culture day 7, organoid MNCs were resuspended and stained at 4 °C with the anti-human CD38 (HIT2; BioLegend), CD27 (O323; BioLegend), CD19 (HIB19; BioLegend), and L/D aqua (Invitrogen). Cells were analyzed with LSRFortessa (BD Bioscience) and visualized with FlowJo software (TreeStar).
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7

Phenotyping SARS-CoV-2-specific B Cells

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Freshly isolated or thawed PBMCs were stained first for viability with LIVE/DEAD Fixable Yellow (Thermo Fisher Scientific) and then for markers with the following mAbs: IgA (IS11-8E10; Miltenyi Biotec), IgD (IA6-2; BD Biosciences), IgG (G18-145; BD Biosciences), IgM (MHM-88; BioLegend), CD3 (SK7, BD Biosciences), CD4 (RPA-T4, BD Biosciences), CD8 (SK1; BD Biosciences), CD14 (61D3; eBioscience), CD16 (CB16; eBioscience), CD19 (SJ25C1; BD Biosciences), CD20 (2H7; BD Biosciences), CD27 (O323; BioLegend or MT271; BD Biosciences), CD38 (HB7; BD Biosciences), and CD71 (CY1G4; BioLegend). Ag-specific B cells were detected by staining with RBD-conjugated to Alexa Fluor 488 (Alexa Fluor 488 Protein Labeling Kit; Thermo Fisher Scientific). RBD was conjugated as previously described.4 (link) After staining, PBMCs were washed and then fixed for 15 min using 2% paraformaldehyde (PFA; Thermo Fisher Scientific). Data were acquired on a BD FACSymphony A5 and analyzed using FlowJo 10.8.0 (BD Biosciences).
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8

Multiparameter Flow Cytometry Analysis

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Blood and lymph nodes were collected at necropsy from uninfected controls, or in acute (7–28 days), or AIDS animals with defined opportunistic infections and/or neoplasm/lymphoma. Lymph nodes were collected and fixed in formalin, frozen for immunohistochemistry to detect specific lymphocyte subsets in situ, and another section was processed into viable single cell suspensions for flow cytometry. Plasma was collected to monitor viral loads and cytokine/chemokine responses.
Flow cytometry for surface and intracellular antigens was performed on viable cell suspensions using standard protocols (36 (link)). Cells were stained with: CD3 (SP34), CD4 (SK3), CD20 (2H7), CXCR5 (MU5UBEE, eBioscience), PD-1 (EH12.2H7, BioLegend), Ki67 (B56), IgD (Southern Biotech), CD27 (O323, BioLegend) and LIVE/DEAD Fixable Aqua Dead Cell Stain Kit (Invitrogen, Grand Island, NY). All antibodies and reagents were purchased from BD Biosciences Pharmingen (San Diego, CA) unless otherwise noted. Isotype-matched controls were included in all experiments. After staining, samples were resuspended in BD Stabilizing Fixative (BD Biosciences) and acquired on a FACS FORTESSA (Becton Dickinson, San Jose, CA). Data were analyzed with Flowjo software (Tree Star, Ashland, OR).
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