The largest database of trusted experimental protocols

Option monitor 3 real time pcr detection system

Manufactured by Bio-Rad

The Option Monitor 3 Real-Time PCR Detection System is a laboratory instrument designed for real-time PCR analysis. It is capable of performing quantitative and qualitative nucleic acid detection and analysis. The system includes a thermal cycler, optical detection system, and software for data analysis.

Automatically generated - may contain errors

2 protocols using option monitor 3 real time pcr detection system

1

Quantitative Analysis of Skeletal Muscle Gene Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted from samples of the skeletal muscle using the TRIzol reagent (TaKaRa), according to the manufacturer’s instructions. The concentration of RNA in the final preparations was calculated from the OD260. Reverse transcription was performed using the PrimeScript TM RT Reagent Kit (TaKaRa) with a 1 μg RNA sample, according to the manufacturer’s instructions. Complementary DNA was used as the template for PCR. Real-time quantitative PCR was performed in an Option Monitor 3 Real-Time PCR Detection System (Bio-Rad) using the SYBR Green Supermix (TaKaRa). The gene-specific primers used are listed in Table 2. The thermal cycling conditions were 40 cycles of 95 °C for 5 s, and 60 °C for 30 s.
For normalization, β-actin was chosen as the reference gene because no variation in its expression was observed between treatments. The relative mRNA abundance of the analyzed genes was calculated using the 2△△Ct method [10 (link)], and the messenger RNA (mRNA) level of each target gene for the CON group was set to 1.0.
+ Open protocol
+ Expand
2

Quantifying Gene Expression in Small Intestine

Check if the same lab product or an alternative is used in the 5 most similar protocols
Real-time quantitative PCR was performed in an Option Monitor 3 Real-Time PCR Detection System (Bio-Rad) using the SYBR Green Supermix (TaKaRa). Expression levels of β-actin (housekeeper genes), SGLT1, GLUT2, divalent metal transporter 1 (DMT1), TNF-α, IL-6, ZO-1, Occluding and Claudin-1 in the small intestinal were analysed using SYBR Premix Ex Taq II (Tli RNaseH Plus) reagents (TakaRa) and the QuanStudio 6 Flex Real-Time PCR detection system (Applied Biosystems). All primers were commercially synthesised and purified by Sangon Biotech Co. Ltd and are shown in Table 2. The reaction was performed in a volume of 10 μl consisting of 5 μl of SYBR Premix Ex Taq (2×), 1 μl of reverse primers, 1 μl of forward primers, 2 μl of doubled-distilled water and 1 μl of cDNA template. Cycling conditions were as follows: 5°C for 30 s, followed by forty cycles at 95°C for 5 s, 60°C for 34 s, under melt curve conditions at 95°C for 15 s, 60°C for 1 min and then 95°C for 15 s (temperature change velocity 0•5°C/s). The target gene mRNA expression level was calculated using the 2 -ΔΔCt method (17) . Each sample was repeated in triplicate.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!