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6 protocols using nlrp1

1

Western Blot Analysis of Inflammasome Proteins

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Total protein was extracted from U251MG cells using RIPA buffer for 30 min on ice. The protein concentrations were detected using a BCA protein assay kit (Thermo Fisher Scientific). Total proteins (30 μg per well) were separated on 10% SDS-PAGE and then transferred onto a PVDF membrane. Following blocking with 5% nonfat milk in TBST for 1 h, the membrane was probed with primary antibodies at 4°C overnight. Later on, the membrane was incubated with the corresponding secondary antibodies (1:5000, Abcam Cambridge, MA, USA) for 1 h at room temperature. Subsequently, blots were visualized using enhanced chemiluminescence (ECL) solution (Thermo Fisher Scientific). Primary antibodies used in the assays were NLRP1 (1:1000, Abcam), cleaved caspase 1 (1:1000, Abcam), GSDMD-N (1:1000, Abcam), Pro-caspase 1 (1:1000, Abcam), GSDMD (1:1000, Abcam), and β-actin (1:1000, Abcam).
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2

Cyclic Stretch-Induced Inflammasome Activation

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After the application of cyclic stretch, HPDLCs were washed with ice-cold PBS, scraped from the Bioflex plates and immediately lysed in a lysis buffer (Cell Signaling Technology, Danvers, MA, USA). Protein concentrations of the samples were determined by using the bicinchoninic acid protein assay kit (Pierce, Rockford, IL, USA). Protein was mixed with an appropriate volume of SDS sampling buffer and separated by SDS-PAGE gel (10%). The protein bands were then transferred onto nitrocellulose membranes by electroblotting. According to the manufacturer's instructions, the membranes were incubated with mouse monoclonal antibody against caspase-1(1:1000, Cell Signaling Technology), caspase-5 (1:1000, Cell Signaling Technology), ASC (1:1000, Santa Cruz Biotechnology, Dallas, TX, USA), NLRP1(1:1000, Abcam), NLRP3(1:1000, Abcam), GAPDH (1:10000, Cell Signaling Technology), or rabbit anti-IL-1β (1:1000, Cell Signaling Technology) primary antibodies overnight at 4°C, washed, and then incubated with anti-mouse or anti-rabbit IgG conjugated to HRP (1:5000, Cell Signaling Technology) for 60 min at room temperature. Protein bands were detected by using the ECL SuperSignal reagent (Pierce). Relative band densities of the proteins were measured from scanned films using National Institutes of Health ImageJ Software.
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3

Evaluating Mitochondrial Autophagy Modulators

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Val-boroPro (Talabostat mesylate; PT-100; Cat. B3941) was purchased from ApexBio (Houston, TX, USA). Agarose was purchased from Vivantis (CA, USA). N-acetyl cysteine (NAC), 3-Methyladenine (3-MA), acridine orange, and monodansylcadaverine (MDC) were purchased from Sigma Chemical Co. (St. Louis, MO, USA). MitoTracker was from Beyotime (Shanghai, China). Rapamycin was purchased from Selleckchem (Houston, TX, USA). 3-TYP was purchased from MCE (Monmouth Junction, NJ, USA). VX-765 was purchased from AdooQ Bioscience (Irvine, CA, US). Antibodies against ATG5, Sirt3, NLRP3, caspase-1, IL-1β, MnSOD, and catalase were purchased from Cell Signaling Technology (Beverly, MA, USA). Other antibodies included NLRP1, 4-HNE, and pro-caspase-1, from Abcam (Cambridge, UK), Lamp2, from Santa Cruz Biotechnology (Santa Cruz, CA, USA), IL-18, from Affinity Biosciences Inc. (Cincinnati, OH, USA), ASC, from Omnimabs Inc. (Irvine, CA, USA), LC3B, from Sigma Chemical Co., and GAPDH, from Yeasen Biotech. (Shanghai, China). Horseradish peroxidase-conjugated secondary antibodies were purchased from ZSGB-BIO (Beijing, China).
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4

Immunohistochemical Analysis of CASP4 and NLRP1

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The fresh tissue collected during the operation was immersed in 4% paraformaldehyde and embedded in paraffin. The wax blocks were sectioned and dewaxed, followed by antigen repair with 3% H2O2 and citrate buffer. The samples were then incubated overnight in primary antibody, followed by secondary antibody and hematoxylin. The primary antibodies used in this study were: CASP4 (1:200, #4450, Cell Signaling Technology, USA), NLRP1(1:200, ab36852, abcam, USA) Finally, the slices were viewed under the microscope.
Human protein mapping (HPA) (https://www.proteinatlas.org/) [33 (link)–35 (link)] provides information on the tissue and cellular distribution of almost all proteins available to the human. In this database, researchers used transcriptomic and proteomic techniques to study protein expression in different human tissues and organs on RNA and protein levels. HPA database was used to analyze the protein expression of PRGs and the immunohistochemical staining images were also downloaded.
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5

Immunohistochemical Analysis of NLRP Inflammasome in SCI

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Tissues from rats (n=5 in each group) were perfused and fixed with 4% paraformaldehyde 72 h after SCI. The spinal cord tissue was sliced into 10-μm sections and fixed with paraffin. The slides underwent dewaxing, hydration, and thermal antigen repair. Antigen was inactivated by 3% hydrogen peroxide-methanol for 10 min and the slides were rinsed with PBS 3 times. The samples were blocked with goat serum (50 μl) at room temperature for 20 min and rinsed with PBS 3 times. The slides were incubated with primary antibodies NLRP1 (1: 1000; Abcam), NLRP3 (1: 1000; Abcam), and ASC (1: 1000; Novus Biologicals) overnight at 4°C. After incubation, the slides were rinsed with PBS 3 times and incubated with biotin-conjugated secondary antibodies (1: 1000; Abcam) at 37°C for 30 min. Subsequently, the samples were stained with DAB solution for 10 min, re-dyed with hematoxylin for 5 min, dehydrated with gradient alcohol, soaked in xylene for 10 min, dried, and sealed with neutral resin. The expression of positive cells was observed under a microscope and captured in high-definition pictures.
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6

Neuroinflammation and Synaptic Dysfunction Markers

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KCC2 (Millipore, 07-432), GABA A R (Abcam, ab94585), GABA B R (Affinity, AF0162), BDNF (Affinity, DF6387), β-Amyloid 1-42 (Abcam, ab201060), TNF-α(Affinity, AF7014), IL-6 (Servicebio, GB11117), IL-1β (Affinity, AF5103), NLRP1 (Abcam, ab3683), NLRP3 (Abcam, ab214185), AMPAR (Abcam, ab31232), PSD95 (Thermo, MA1-045), Iba-1 (Servicebio, GB11105), GFAP (Servicebio, GB12096), β-Tubulin (Affinity, T0023), β-Actin (Affinity, AF7018), Goat Anti-Rabbit IgG (H+L) HRP (Affinity, S0001), Goat Goat Anti-Mouse IgG (H+L) HRP (Affinity, S0002).
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