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33 protocols using q vd oph

1

Isolation and Treatment of Leukemic Cells

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Peripheral blood lymphocytes of healthy donors were isolated from buffy coats on Histopaque 1077 (Sigma-Aldrich) as described earlier [35 (link)]. Leukemia cell line CML-T1 (German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany) and HL-60 (European Collection of Animal Cell Cultures, Great Britain) were cultivated in RPMI 1640 (Biochrom AG, Germany) supplemented with 10% FCS, 37°C, and 5% CO2 atmosphere. Decitabine, ATRA (both from Sigma-Aldrich), and SAHA (Cayman Chemical Company, Ann Arbor, MI, USA) were added from 1–100 mM stock solution to final concentration of 1 μM for 48 h. N-acetyl-L-cysteine (NAC, Sigma-Aldrich) and caspase inhibitors z-VAD-fmk (Santa Cruz) and Q-VD-OPh (R&D Systems) were added to final concentration of 10 mM (NAC), 50 μM (z-VAD-fmk), and 10–30 μM (Q-VD-OPh), respectively.
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2

Western Blot Analysis of Cell Lines

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The following primary antibodies were used for western blots of both mouse and human cell lines: anti-MLKL (produced in-house;25 (link) available as MABC604, EMD Millipore, Billerica, MA, USA), anti-GAPDH (2118, Cell Signalling Technology, Danvers, MA, USA), anti-Actin (A-1987, Sigma-Aldrich, St Louis, MO, USA), anti-RIPK1 (610458, BD Biosciences, Franklin, NJ, USA), anti-Hsp90 (ADI-SPA-835, Enzo, Life Sciences, Farmingdale, NY, USA), anti-Cdc37 (D11A3, Cell Signalling Technology), and anti-VDAC (Sigma-Aldrich). Anti-mouse RIPK3 (PSC-2283-c100, Axxora, San Diego, CA, USA) and anti-human RIPK3 (ab56164, Abcam, Cambridge, UK) were used for their respective cell lines.
Recombinant hTNF-Fc, produced in-house, and the Smac mimetic, Compound A, were described previously.71 (link), 72 (link) QVD-OPh was obtained from R&D Systems (Minneapolis, MN, USA). Both NVP-BEP800 and 17-AAG were obtained from Selleckchem (Sydney, NSW, Australia), and AT13387 was produced by Active Biochem (Wanchai, Hong Kong).
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3

Transfection and Lentiviral Silencing of Apoptosis Regulators

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The BH3-mimetics ABT-737, ABT-263 and ABT-199 were purchased from Selleck Chemicals (Houston, TX, USA), the pan-caspase inhibitor Q-VD-OPh from R&D Systems (Abingdon, UK) and paclitaxel from Sigma-Aldrich (Saint-Quentin Yvelines, France).
RNA interference was performed either by transfection using Lipofectamine RNAiMax (Invitrogen, Saint-Aubin, France), according to the manufacturer's instructions, or by lentiviral transduction as previously described.31 (link) The following siRNAs were used: control siRNA (D-001810) and siRNA Bak (L-003305), siRNA Bcl-xL (L-003458) from Dharmacon (Lafayette, CO, USA), siRNA Cdc20 (4392420) from Life Technologies (Saint Aubin, France), siRNA Bcl-2 (sc-29214) from Santa Cruz Biotechnology (Bergheimer, Germany), siRNA Mcl-1 (120644) from Ambion (Saint Aubin, France), siRNA Bax from IDT (Leuven, Belgium). The following siRNA sequence was used in lentiviral experiments targeting Bcl-xL: 5′-AGGATACAGCTGGAGTCAG-3′.
Plasmid transfection was made by using Lipofectamine 2000 (Invitrogen), according to the manufacturer's instructions and medium was changed 6 h later.
The lentivector coding for Histone-2B-RFP was kindly provided by Jan Van Deursen, Mayo Clinic, Rochester, MN, USA.
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4

Necroptosis Induction and Blockade

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Necroptosis was induced in vitro by pre-treatment 30min with Q-VD-OPh (R&D Systems, 10 μM) and Birinapant (Selleckchem, 5 μM) prior stimulation with TNFα (R&D Systems, 10 ng.mL-1) for 48h. Necroptosis was blocked using Necrostatin Nec (Selleckchem, 20 μM).
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5

Cell Line Cultures and Inhibitors

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MCF-7 and MDA-MB231 cell lines were from American Type Culture Collection (ATCC, Rockville, USA), and Cal51 from DSMZ (Braunschweig, Germany). The ER-Src MCF-10A cell line was a generous gift of Dr Kevin Struhl (Harvard Medical School, Boston, USA). All cell lines were cultured following supplier's recommendations. The ER-Src MCF-10A cells contain an integrated fusion of the v-Src oncoprotein and the ligand-binding domain of estrogen receptor and are induced to rapidly transform when grown with 1 μM 4OH-TAM (Sigma-Aldrich, Saint-Quentin Yvelines, France), as previously described [13 (link)].
YM155, Necrostatin-1 and BAY11-7085 were purchased from Selleck Chemicals (Houston, USA) and the pan-caspase inhibitor Q-VD-OPh from R&DSystems (Abingdon, UK). Chloroquine, 3-Methyl-Adenin (3-MA), Bafilomycin A1 were purchased from Sigma-Aldrich (Saint-Quentin Yvelines, France). AS602868 was a generous gift of Merck-Serono International SA [14 (link)]. Antibodies against Survivin was purchased from R&DSystems (Lille, France), antibodies against LC3, p21, pS15-p53, pS317-Chk1, pT68-Chk2, IKK2, Actin, γH2AX from Merck Millipore (Saint-Quentin en Yvelines, France), antibodies against HSP90, p53 and cleaved (i.e. activated) caspase3 from Becton Dickinson (Pont de Claix, France), antibody against BAX from Dako (Courtaboeuf, France), and antibody against p62 from Santa Cruz (Heidelberg, Germany).
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6

Chemical Compounds for Cell Biology

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N-(p-amylcinnamoyl)anthranilic acid (ACA), maintained as a 50 mM stock solution in dimethylsulfoxide (DMSO), 2-aminoethoxydiphenyl borate (2-APB; 75 mM stock solution in DMSO), aristolochic acid (75 mM stock solution in DMSO) and 3-methyladenine (3-MA; 50 mM stock solution in DMSO) were purchased from Sigma (St. Louis, MO, USA). N-Methyl-N'-nitro-N-nitrosoguanidine (MNNG; 0.5 M stock solution in DMSO) was purchased from AccuStandard (New Haven, CT, USA). Doxorubicin hydrochloride and tamoxifen citrate were purchased from Thermo Scientific (Waltham, MA, USA). Q-VD-OPh was purchased from R&D Systems (Minneapolis, MN, USA) and maintained as a 50 mM stock solution in DMSO. Propidium iodide (PI) (10 mg/ml solution) was purchased from Thermo Scientific. ApoScreen Annexin V-fluorescein isothiocyanate (FITC) was purchased from Southern Biotech (Birmingham, AL, USA).
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7

Synthesis and Sources of Reagents

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The synthesis of racemic fluorizoline was performed as previously described [2 ]. Actinomycin D was purchased from Enzo Life Sciences (Farmingdale, New York, USA). Q-VD-OPh and Z-IETD-FMK were from R&D systems (Minneapolis, Minnesota, USA). Recombinant mouse TNFα was from PeproTech (Rocky Hill, New Jersey, USA). MnTBAP, etoposide and cycloheximide were from Sigma-Aldrich (Saint Louis, Missouri, USA).
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8

Apoptosis Pathway Regulation Analysis

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Hydralazine hydrochloride, procainamide, dihydroethidium (DHE) and mouse anti-β-actin monoclonal antibody were from Sigma-Aldrich (ST. Louis, MO). The fluorescent cationic lipophilic dye 3,3′-dihexyloxacarbocyanine iodide (DiOC6 (3)) and Alexa Fluor 488-labeled goat anti-mouse were obtained from Molecular Probes (Carlsbad, CA). Manganese-porphyrin Mn(III)TMPyP was from Cayman Chemical (Ann Arbor, MI). Q-VD-OPh, a wide-spectrum caspase inhibitor, and anti-human caspase-9 monoclonal antibody were from R&D Systems (Minneapolis, MN). Cytofix/cytoperm was from BD Biosciences (San José, CA). Anti-Bak (Ab-1) monoclonal antibody and anti-Chk1 (pSer317) rabbit polyclonal antibody were obtained from Calbiochem (Darmstadt, Gemany). Anti-phospho-histone H2AX (Ser139) monoclonal antibody was from Upstate/Millipore (Billerica, MA). Anti-human caspase-8 monoclonal antibody was purchased from Cell Diagnostica (Munster, Germany). Anti-human caspase-3 polyclonal antibody was obtained from Stressgen (Ann Arbor, MI). Mouse monoclonal DNMT1 antibody was from Abcam (Cambridge, UK).
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9

Cell Line Cultivation and HDACi Compounds

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Cell lines were obtained from American Type Culture Collection and the NCI Anticancer Drug Screen; the p21-deficient HCT116 subline (HCT116 p21−/−) was a gift from Dr. Bert Vogelstein (Johns Hopkins University). Cell line validation was performed and DNA fingerprinting confirmed their identities. Cultures were replaced in less than 3 months. Cells were cultured in RPMI 1640 or IMEM (GIBCO, Grand Island, NY) supplemented with 10% fetal bovine serum (GIBCO, Grand Island, NY), 2 mM glutamine (BioFluids, Rockville, MD), and 100-units/L penicillin-streptomycin (BioFluids). MCF-10A was grown in DMEM-F12 medium (Mediatech, Inc., Herndon, VA) supplemented with 5% horse serum, 10 μg/ml insulin, 20 ng/ml epidermal growth factor,0.5 μM/ml hydrocortisone (Sigma, St. Lois, MO), and 100-units/L penicillin-streptomycin (BioFluids). HDACis romidepsin and vorinostat were obtained from the Anticancer Drug Screen (Cancer Therapy Evaluation Program, NCI, NIH, Bethesda, MD) and Cayman Chemical (Ann Arbor, MI), dissolved in DMSO at 100 μg/ml and 100 mM, respectively, and stored in aliquots at −20°C. Caspase Inhibitor Q-VD-OPh was obtained from R&D Systems (R&D Systems, Minneapolis, MN) and dissolved in DMSO at 10 mM.
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10

Apoptosis Induction and Caspase-3 Activation

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Cells at a concentration of 2 × 106 cells/ml per condition were incubated with H2O2 (Thermo Fisher Scientific), Q-VD-OPh (R&D Systems) or combinations of these at 37 °C on a shaking heat block for 4 h. Eol-1 cells were pelleted by centrifugation at 3000 × g for 60 s and resuspended with whole-cell lysis buffer. Sample was incubated on ice for 10 min then NP-40 was added, briefly vortexed and centrifuged for 20 min at 3000 × g. Supernatant was removed and the remaining cell pellet was resuspended in sample buffer before boiling at 95 °C for 5 min. Lysate were run on 12% precast gels (Thermo Fisher Scientific, Rockford, IL, USA) and transferred onto PVDF (Immobilon-P, Millipore, Herts, UK). Membranes were blocked for 1 h in 5% (wt/vol) dried milk/TBS/0.1% Tween-20 before probing with antibodies to cleaved caspase-3 diluted 1 : 500 (Cell Signaling Technologies) at 40C overnight or GAPDH diluted 1 : 20 000 (Sigma-Aldrich, St. Louis, MO, USA) 1 h at room temperature. Following 3 × 5 min washes in TBS/0.1%Tween-20, the blots were incubated with HRP-conjugated secondary antibody (Dako, Glostrup, Denmark) diluted 1 : 2500 for 1 h at room temperature before incubation with ECL (GE Healthcare, Bucks, UK) exposure to BioMax MS-1 X-ray-sensitive film, and processing (X-Ograph Imaging Systems, Wilts, UK).
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