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3 protocols using gfr basement membrane matrix

1

Matrigel-based 3D Cell Culture Immunofluorescence

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Cells (7 × 104) were seeded into 35‐mm cell culture dishes growing at 1 : 1 ratio of complete medium and Matrigel Growth Factor Reduced (GFR) Basement Membrane Matrix (#354230; BD Biosciences) for 48 h. For the inhibitor treatment, the same concentrations were used as described in Section 2.1. Cells were processed for immunofluorescence, as described in Section 2.10 with slight modifications: increased PFA fixation (2 h) and permeabilization with 0.5% Triton X‐100/PBS (2 h).
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Prostate Cancer Organoid Cytotoxicity Assay

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Primary patient‐derived cancer organoids (PDCOs) were derived from radical prostatectomy specimen from patients with high‐risk localized prostate cancer as described before. Biopsy specimen was partially digested and propagated in hanging 50% Matrigel™ droplets (GFR Basement Membrane Matrix, BD Biosciences, Franklin Lake, NJ, USA) followed by transferring to Stacks wells in 50% Matrigel with PrEGM media (Lonza, Basel, Switzerland) supplemented with 0.1 μg EGF (Gibco, Thermo Fisher Scientific, Waltham, MA, USA), and 10 μM Y‐27632 (Sigma‐Aldrich, Millipore Sigma, USA). PDCOs were treated with DMSO, 10 nM Docetaxel, or 100 μM Bicalutamide (Selleck Chemicals, Houston, TX, USA) for 72 h in PrEGM media supplemented with 10 μM Y‐27632 (Selleck Chemicals, Houston, TX, USA). Wells were rinsed three times with 1xPBS prior to staining with Image‐IT Dead™ Green, EpCAM Alexa Fluor 647, and Hoechst33342 (Supporting Information 2, Table S1) for 30 min at 37°C. Wells were then rinsed three times with PBS, fixed with 1% PFA (Cytofix, BD Biosciences) for 15 min followed by three washes with PBS. Wells were then mounted with SlowFade™ Gold Antifade Mounting Media (Invitrogen, Thermo Fisher Scientific, Waltham, MA, USA) and imaged on a Nikon Yokogawa CSU‐W1 Spinning Disk Confocal Microscope equipped with Hamamatsu Orca Flash cameras. 20x images were then analyzed with NIS‐Elements software.
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3

Assaying Cancer Cell Metastatic Potential

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To examine the metastatic potential of cancer cells in response to a chemoattractant, we performed migration and invasion assays using 24-well cell culture inserts (8.0 μm membrane pores, BD Biosciences). For migration assay, cells (5.0×104 A549, 1.0×105 NCI-H292 or NCI-H358) in serum-free RPMI 1640 medium were seeded on the membrane of the transwell insert. As a chemoattractant, 10% FBS was used in the bottom chamber. For invasion assay, the cell culture inserts were coated with 2% matrigel with growth factor reduced (GFR) basement membrane matrix (BD Biosciences). Cells in serum-free medium were plated on the matrigel, and complete medium was then added into the bottom chamber of the companion plate. After 24 h-incubation at 37°C, cells were fixed with cold 4% paraformaldehyde and the upper surface of each membrane was removed with cotton swabs. The cells that had migrated to the underside of the membrane were stained with 4 μg/mL Hoechst 33258. The fluorescent nuclei were visualized with an inverted phase-contrast fluorescence microscope (Carl Zeiss), and the migrated cells were counted based on whole areas of transwell inserts.
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