Our analysis was conducted on the Alzheimer’s Disease Neuroimaging Initiative (ADNI) dataset publicly available at (adni.loni.usc.edu). The initiative was launched in 2003 as a public-private partnership, led by Principal Investigator Michael W. Weiner, MD (see
www.adni-info.org for updates). To match the aim of our study, we combined two types of ADNI datasets:
DWI volumes was taken at two-time points, at the baseline and after 12 months (we refer to this as follow-up). In this set, we used a cohort comprised of 31 Alzheimer’s disease patients (age: 76.5 ± 7.4 years), and 49 healthy elderly subjects (77.0 ± 5.1) matched by age, as well as 57 MCI subjects (age: 75.34 ± 5.93).
The PLINK binary files (BED/BIM/FAM) genotypic data for AD, controls and Early MCI.
The DWI and T1-weighted were obtained by using a
GE Signa scanner 3 T (General Electric, Milwaukee, WI, USA). The T1-weighted scans were acquired with voxel size =
mm3 TR = 6.984 ms; TE = 2.848 ms; flip angle = 11°). DWI were acquired at voxel size =
mm3, scan time = 9 min, and 46 volumes (5 T2-weighted images with no diffusion sensitization b0 and 41 diffusion-weighted images b = 1000
s/
mm2).
Elsheikh S.S., Chimusa E.R., Mulder N.J, & Crimi A. (2020). Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer’s Disease. Scientific Reports, 10, 1433.