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18 protocols using notch3

1

Antibody Validation for Signaling Pathways

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Antibodies to H3K27me3, JMJD3, p-Smad3, Smad3, p-AKT, AKT, p-ERK1/2, ERK1/2, Notch1, Jagged-1, UTX and DNMT1 were purchased from Cell Signaling Technology (MA, USA). Antibodies to fibronectin, α-SMA, collagen III, JMJD3, TGF-β1, Notch3 were purchased from Abcam (MA, USA). An antibody to Smad7 was obtained from Santa Cruz Biotechnology (CA, USA). An antibody to β-actin, PTEN and FBXW7 were obtained from proteintech (Wuhan, China). β-tubulin was purchased from Sigma-Aldrich (MO, USA). GSKJ4 was purchased from Selleck (Houston, USA). DMSO and other chemicals were obtained from Beyotime (Shanghai, China). Lipofectamine 3000 was obtained from Invitrogen-Thermo Fisher Scientific (CA, USA).
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2

Notch Signaling in Vascular Remodeling

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Recombinant Tat101 was purchased from ImmunoDiagnostics. Recombinant PDGF-BB was purchased from R&D Systems. Jagged-1 and DAPT were purchased from Sigma. Antibodies were obtained from the following sources: Ki67 (abcam), NICD (cell signaling), Actin (sigma), α-SM, Notch3 (cell signaling), VEGF-A (abcam); goat anti-rabbit (sc-2004) and goat anti-mouse (sc-2005) were from Santa Cruz Biotechnology. Flag-tagged CSL-VP16 plasmids were obtained from Dr. Aly Karsan (University of British Columbia, Vancouver, Canada) and control Notch3 siRNA (sc-29798), RBPJ siRNA (sc-41446), and scrambled siRNA (sc-37007) were from Santa Cruz Biotechnology.
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3

Western Blot Analysis of hADSCs

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The hADSCs were lysed on ice for 15 min using Radio Immunoprecipitation Assay (RIPA) lysis buffer (BeyoTime, Shanghai, China) supplemented with protease inhibitor cocktail (Roche, Basel, Switzerland). The protein concentration of the lysate was then measured using the BCA Protein Assay Kit (BeyoTime, Shanghai, China) according to the manufacturer’s protocol. Protein sample were subjected to SDS-PAGE and transferred to polyvinylidene difluoride membranes (Millipore, Billerica, United States), which were blocked with 5% fat-free milk and then incubated with specific primary antibodies overnight at 4°C An anti-rabbit-horseradish peroxidase (HRP) secondary antibody was added, and the staining was visualized using an enhanced chemiluminescence detection system (Millipore, Billerica, United States). The primary antibodies used in this study were as follows: SIRT6, RUNX2, SP7, COL1A1, NOTCH1, NOTCH2, NOTCH3, NOTCH4, JAG1, HEY1 (Abcam, Cambering, United Kingdom), HA, Flag, GAPDH (BeyoTime, Shanghai, China) DNMT1, Acetylated Lysine (Ac-K) (Cell Signaling Technology, Danvers, MA, United States).
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4

Western Blot Analysis of Notch Pathway

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Total protein extraction was performed in tissues or cell samples, and total protein concentrations were determined. After being separated on SDS-PAGE gel, proteins were transferred to PVDF membrane (Bio-Rad) which was then blocked with 5% skimmed milk. Next, the membrane was incubated with primary antibody at 4℃ overnight and then with second antibody (Proteintech) for 1 h at room temperature. The antigen-antibody complexes were tested with ECL reagent (Monad Biotech. Co.Ltd., China). The primary antibodies were listed as follows: APEX1 (Proteintech), β-actin (Proteintech), Jagged1 (Abcam), DLL4 (Proteintech), Notch1 (Abcam), Notch3 (Abcam), RBP-JK (Proteintech), Hes1 (Abcam), Hey1 (Proteintech).
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5

Immunohistochemical Analysis of NOTCH3 Protein

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Apical papillae were obtained as mentioned above and processed for cryosectioning; 8 μm-thick sections were fixed with cold acetone at −20 °C for 15 min, washed in PBS, treated with 1.5% hydrogen peroxide for 30 min and blocked with 2.5% normal horse serum (Vectastain Elite ABC kit; Vector laboratories) for 1 h. Tissue sections were then incubated with mouse monoclonal anti-NOTCH3 antibodies (dilution 1:100, Abcam, USA) for 1 h at room temperature, followed by washing and incubation with biotinylated anti-mouse immunoglobulin G (secondary antibody) for another 1 h. After washing, avidin-peroxidase complex was added and incubated for 30 min, followed by washing and the addition of peroxidase substrate solution for 5 min. Sections were counterstained with hematoxylin solution (Sigma, USA). Negative control slides were prepared in parallel without adding the primary antibody.
For immunofluorescence staining, frozen sections of AP were fixed with cold acetone at −20 °C for 15 min, washed and blocked for 1 h. Sections were then incubated with primary antibodies: NOTCH3 (dilution 1:100, Abcam, USA) and CD146 (dilution 1:50, Invitrogen, USA) for 1 h at room temperature, followed by washing and incubation with the appropriate fluorophore-conjugated secondary antibodies for another 1 h.
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6

Immunoblot and Immunofluorescence Assay Protocol

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Immunoblot and immunofluorescence assays were performed as previously described [29 (link)]. Antibodies employed to perform these studies were as follows: centrin (20H5 kindly provided by Dr. Salisbury’s laboratory at the Mayo Clinic); ERα and pericentrin (Santa Cruz Biotechnology, Dallas, TX, USA); AURKA (Cell Signaling Technology, Danvers, MA, USA); CD44, CD24, NOTCH1, NOTCH2, and NOTCH3 (Abcam, Cambridge, MA, USA); and β-actin and α-tubulin (Sigma-Aldrich, St. Louis, MO, USA). Secondary antibodies were obtained from Molecular Probes (Eugene, OR, USA).
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7

Western Blot Analysis of Notch Signaling

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Cell protein lysates were separated by 10% SDS-PAGE and blotted onto a polyvinylidene fluoride (PVDF) membrane (Roche Diagnostics, Mannheim, Germany). After soaking in 10 ml of 5% nonfat milk in Tris-buffered saline with Tween 20 (TBST) solution for 1 h, the membrane was incubated with human polyclonal NOTCH3 (1:500 dilution; Abcam, Cambridge, UK), monoclonal NICD3 (1:1,000 dilution; Abcam), monoclonal HES1 (1:1,000 dilution; Cell Signaling Technology, Danvers, MA, USA), and polyclonal antibody against GAPDH (1:2,000 dilution; Sigma-Aldrich, St. Louis, MO, USA). Horseradish peroxidase-conjugated goat anti-rabbit IgG was used as secondary antibody (1:5,000 dilution; Sigma-Aldrich). Results were visualized following treatment with enhanced chemiluminescent (ECL) substrate.
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8

Immunofluorescence Analysis of Nerve Marker Expression

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Cryosections prepared from 3D-collagen gel or GMSC-seeded nerve conduits were blocked and permeabilized for 1 h at room temperature in PBS with 2.5% goat serum and 0.5%Triton X‐100, followed by incubation with the following primary antibodies at the appropriate dilution overnight at 4 °C: p75 (mouse IgG, 1:200, Sigma), SOX-9 (rabbit IgG, 1:200, Cell Signal Tech), SOX-10 (mouse IgG, 1:200, R & D), S-100β (rabbit IgG, 1:200, Boster Biological Tech), NOTCH3 (rabbit IgG, 1:200, Abcam), HES1 (rabbit IgG, 1:200, Cell Signaling Tech), vinculin (mouse IgG, 1:400, Millipore), TRITC-conjugated phalloidin (1:400, Millipore), BDNF (rabbit IgG, 1:200, Abcam), GDNF (rabbit IgG, 1:200, Abcam), or NGF (rabbit IgG, 1:200, Abcam). After washing with PBS, cells were incubated with appropriate secondary antibodies at room temperature for 1 h: goat anti-rabbit IgG–AlexaFluo-488 (1:300, BioLegend). Isotype-matched control antibodies (BioLegend) were used as negative controls. Nuclei were counterstained with 4′, 6-diamidino-2-phenylindole (DAPI). Images were captured using Olympus inverted fluorescence microscope (IX73). For semi-quantitative analysis, at least six randomly selected regions of interesting (ROI) were visualized and the integrated immunofluorescence intensity was measured using Olypus cellSensTM imaging software.
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9

Immunohistochemical Analysis of NOTCH3 and COL1A1

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Formalin-fixed, paraffin-embedded tissues were sliced consecutively into 4-μm sections and then subjected to IHC analysis. The sections were incubated with NOTCH3 (1:400 dilution; Abcam) and COL1A1 antibody (1:400 dilution; Abcam) at 4°C overnight. After washing in PBS, sections were further incubated with HRP-conjugated secondary antibody for 30 min at 37°C. Then substrate-chromogen (DAB) solution was employed to incubate the tumor tissues for 10 min. Finally, automated hematoxylin was used to counterstain the slides for 5 min. Cells positive for NOTCH3 and COL1A1 appeared yellow or yellowish brown. The immunostaining was microscopically evaluated by two independent pathologists. A semiquantitative scoring system was based on the staining intensity and proportion of positive cells19 (link).
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10

Western Blot Analysis of Protein Expression

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Total protein was isolated from cells after different treatments by using RIPA lysis buffer. Protein concentrations of each group were quantified with BCA kit based on instructions. Total 30 μg protein was loaded on 10% sodium dodecyl sulfate polyacrylamide gel (SDS-PAGE). The electrophoresis conditions have a constant voltage of 120 V for 120 min. Then, protein was transferred to polyvinylidene difluoride membrane from gel (300 mA, 90 min). Membranes were blocked by 5% milk in 1x TBST and then incubated with primary antibodies CDH1 (1 : 1000, Life, USA), VIM (1 : 1000, Santacruz, USA), NOTCH3 (1 : 1000, Abcam, USA), and β-actin (1 : 2000, Abcam, USA) overnight at 4°C. Next, secondary antibody in 5% milk was incubated with membranes at room temperature for 1 h. The LI-COR Odyssey Imaging System was used for blot imaging.
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