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Streptavidin alexa fluor 488 conjugate

Manufactured by Thermo Fisher Scientific
Sourced in United States

Streptavidin-Alexa Fluor 488 conjugate is a fluorescent labeling reagent composed of streptavidin covalently linked to the Alexa Fluor 488 dye. It is designed for use in various bioanalytical techniques that require the detection and quantification of biotinylated molecules.

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64 protocols using streptavidin alexa fluor 488 conjugate

1

EGFR-Positive Cell Binding Assay

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Example 4

Cell Binding Experiments

Cell lines. EBC-1 and CHO-K1 cells were cultured in DMEM with 4 mM L-glutamine (Sigma-Aldrich) and DMEM-F12+GlutaMax™ (Gibco®), respectively, both supplemented with 10% fetal bovine (Sigma-Aldrich) at 37° C. and 5% CO2.

Cell binding experiments. Cell binding experiments were performed by using EGFR-overexpressing EBC-1[3] and EGFR-negative CHO-K1 cells in combination with confocal fluorescence microscopy and flow cytometry, respectively. Washing and incubation steps were performed at 4° C. using PBS with 1% BSA. For microscopy based experiments, cells were grown on glass coverslips followed by consecutive labelling with 100 nM of respective antibody-conjugates and 1:200 diluted Streptavidin Alexa Fluor® 488 conjugate (Life Technologies). Then, cells were fixed with 4% paraformaldehyde, mounted with ProLong® Diamond Antifade Mountant with DAPI (Life Technologies) and scanned using a Leica TCS SP5 confocal microscope equipped with a 100× objective (Leica Microsystems). For flow cytometry, 2×105 cells were incubated with 100 nM of respective antibody-conjugates and in a consecutive step with 1:200 diluted Streptavidin Alexa Fluor® 488 conjugate (Life Technologies). Cell fluorescence was determined using a BD Influx cell sorter and BD FACS Sortware with detection of 2×104 events.

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2

Chromosomal Analysis of Mouse Line #9

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Chromosomal samples were prepared from bone marrow cells of mouse line #9. The mice were injected intraperitoneally with 0.1 mg/μL colcemid and euthanised approximately 60 min afterwards. Chromosome isolation and FISH were performed as described with modification29 (link),30 (link). Each DNA probe, Adamts20 (15qE3), K18N (15qF2), and G41405N (15qF2), was amplified from the genomic DNA of a C57BL/6NCrSlc mouse by PCR (Supplementary Table 3). Adamts20 (15qE3) was labelled with Biotin-16-dUTP (Roche, Mannheim, Germany), and K18N (15qF2) and G41405N (15qF2) were labelled with Digoxigenin-11-dUTP (Roche), respectively. DNA probes were detected with Streptavidin Alexa Fluor® 488 conjugate (Thermo Fisher Scientific) or anti-digoxigenin-Rhodamine (Roche). Finally, the chromosomes were stained with 4′,6-diamidino-2-phenylindole (DAPI) (Roche).
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3

Glycan Microarray Analysis of Viral Binding

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Glycan microarray slides were produced under contract for CDC using a glycan library by Professor James Paulson at the Scripps Research Institute (La Jolla, CA), funded (see Table Supplementary 1 for a list of glycans used for analyses). Virus preparations were diluted in phosphate-buffered saline (PBS) with 2% (wt/vol) bovine serum albumin to an HA titer of 128. Virus suspensions were applied to the slides, and the slides were incubated at 4 °C for 1.5 h. Unbound virus was washed off with brief sequential rinses in PBS with 0.05% Tween 20 (PBS-T) and PBS. The slides were then immediately incubated with ferret serum raised against A/South Africa/3626/2013 A(H1N1)pdm09 (30 min) and then with a biotinylated anti-ferret IgG antibody (Rockland) in combination with streptavidin-Alexa Fluor488 conjugate (30 min) (Thermo Fisher, Waltham, MA, USA), with brief PBS-T/PBS washes after each incubation. After the final PBS–T/PBS washes, slides were washed briefly in deionized water, dried by a gentle steam of nitrogen gas, and immediately subjected to imaging. Fluorescence intensities were detected using an Innoscan 1100AL scanner (Innopsys, Carbonne, France). Image analyses were carried out using ImaGene 9 image analysis software (BioDiscovery, El Segundo, CA, USA).
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4

Dual-probe In Situ Hybridisation Protocol

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Embryos were post-fixed in 4% PFA then washed in PBT (PBS with 0.1% Tween-20) prior to hybridisation. Hybridisation was performed at 56°C overnight in hybridisation buffer (50% formamide, 5x SSC, 5x Denhardt’s solution, 100 μ g/ml yeast tRNA, 2.5% w/v dextran sulfate, 0.1% Tween-20), with at least 1 hr of prehybridisation before introducing the probes. Embryos were simultaneously hybridised with one DIG probe and one FITC probe to different segmentation genes. Embryos from mutant crosses were additionally hybridised with a DIG probe to lacZ. Post-hybridisation washes were carried out as in Lauter et al., 2011 (link). Embryos were then incubated in peroxidase-conjugated anti-FITC and alkaline phosphatase (AP)-conjugated anti-DIG antibodies (Roche, Basel, Switzerland) diluted 1:4000. Tyramide biotin amplification (TSA biotin kit, Perkin Elmer, Waltham, MA) followed by incubation in streptavidin Alexa Fluor 488 conjugate (ThermoFisher Scientific, Waltham, MA) was used to visualise the peroxidase signal. A Fast Red reaction (Fast Red tablets, Kem-En-Tec Diagnostics, Taastrup, Denmark) was subsequently used to visualise the AP signal. Embryos were mounted in ProLong Diamond Antifade Mountant (ThermoFisher Scientific) before imaging.
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5

Proximity Labeling of Cardiomyocyte Proteins

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For proximity labeling, isolated cardiomyocytes were first exposed to biotin-phenol and H2O2 as described above. After quenching, the cells were fixed for 15 minutes in 4% paraformaldehyde, washed with glycine/PBS twice, treated with PBST (0.1% Triton X-100 [v/v] in PBS) for 5 minutes, and blocked with 3% BSA (w/v) in PBS for 1 hour. Indirect immunofluorescence was performed using a 1:500 anti-V5 antibody (Thermo Fisher Scientific, R960-25) and 1:200 Alexa 594–labeled goat-anti-mouse antibody (Thermo Fisher Scientific, A-11032), and 1:800 streptavidin Alexa Fluor 488 conjugate (Thermo Fisher Scientific, S32354). For immunofluorescence without proximity labeling, isolated cardiomyocytes were fixed for 15 minutes in 4% paraformaldehyde. Indirect immunofluorescence was performed using either a 1:200 rabbit anti-FLAG antibody (MilliporeSigma, F7425) or anti-NaV1.5 antibody (Alomone, ASC-005), and 1:400 FITC-labeled goat anti-rabbit antibody (Thermo Fisher Scientific, A-11034). Images were acquired using a confocal microscope.
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6

Fluorescence-Activated Screening of Engineered Yeast Proteins

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Fluorescence-activated cell sorting (FACS) was carried out essentially as described20 (link). Induced yeast were simultaneously labeled with mouse anti-c-Myc antibody (9E10, BioLegend, Cat: 626802, 2.5 μg/mL) and 10–100 nM biotinylated target protein or biotinylated negative control protein for at least 30 min at room temperature. Cells were washed once with PBSA, labeled with goat anti-mouse Alexa Fluor 647 conjugate (Thermo Fisher Scientific, Cat: A-21235, 10 μg/mL) and streptavidin Alexa Fluor 488 conjugate (Thermo Fisher Scientific, Cat: S-11223, 2 μg/mL) for 15 min at 4 °C, and washed with 1 mL PBSA. Cells with the highest binding : ligand display ratio (AlexaFluor488:AlexaFluor647) were sorted using a FACSAria II (BD Bioscience).
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7

Visualizing Cellular Uptake of YC-1 Biotin

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The predicted covalent binding of YC-1 suggested opportunities to track its cellular uptake and localization via immunofluorescence. Briefly, cells were seeded into 6-well plates on collagenized glass coverslips. YC-1 biotin treated cells were washed three times with PBS, fixed at room temperature in 4% paraformaldehyde in PBS for 15 min with light agitation, washed three times with PBS, permeabilized and blocked for 30 min with 1% whole goat serum in 0.1% Tween in PBS (0.1% PBS-T). Next, 4′,6-diamidino-2-phenylindole (DAPI) (Molecular Probes) and streptavidin, Alexa Fluor 488 conjugate (Thermo Fisher, S11223) was added for 30 min in 0.1% PBS-T with light agitation at room temperature. Cells were washed three times with PBS and mounted with ProLong Gold Antifade reagent (Molecular Probes). A Nikon Eclipse Ti inverted fluorescent microscope with an oil-immersed 60× objective was used for imaging. Linear range of intensity and no thresholding was used for acquired images. Consistent filter settings for DAPI, and 488 FITC channels were used for sequential scans.
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8

Cholecystokinin-expressing cells in medaka brain

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Adult female and male d-rR wild type medaka were deeply anesthetized and their brains were fixed with 4% paraformaldehyde (PFA) in PBS and cryosectioned. Females are used as representative data in the main figure. Their body weight is 0.11-0.15 g.
To label the CCK-expressing cells, we used an anti-cholecystokinin (26-33) antibody raised in rabbit (C2581, 1:5000; Sigma Aldrich). After antigen retrieval with HistoVT (Nacalai Tesque, Kyoto, Japan) according to the manufacturer's protocol, a primary antibody was applied with 5% normal goat serum. After incubation with anti-rabbit IgG, a secondary antibody, signal amplification with an ABC Elite kit (Vector Laboratories, Burlingame, CA) was applied. Immunoreactivities were visualized with Streptavidin, Alexa Fluor 488 conjugate (1:500; Thermo Fisher). Some of the samples were labeled with 4′,6-diamidino-2-phenylindole (DAPI). We observed the signals through a confocal microscope FV-1000 (Olympus) or Leica TCS SP8 (Leica Microsystems).
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9

Immunohistochemical Analysis of Kidney and Spleen

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Kidneys were obtained from 6-month-old B6, Lpr and Lpr. Rictorfl/fl mice, and fixed in 4% paraformaldehyde (PFA) overnight, osmotically dehydrated in 20 % (w/v) sucrose, embedded in OCT, and cryosectioned to 6 μM. Sections were fixed in −20°C acetone for 2 min and blocked in PBS containing 8% goat serum, 1% bovine serum albumin (BSA) and 0.1% Tween 20 for 45 min. Deposition of immunoglobulin (IgG) and complement component 3 (C3) in the kidney tissue were stained with PE labeled goat anti-mouse IgG (Invitrogen) and FITC labeled rat anti-mouse C3 (Cedarlane) antibodies. Similarly, spleens were obtained from 6 months old mice, and processed as above. Frozen sections were fixed and blocked as described above, and incubated with primary antibodies Biotin Peanut Agglutinin (PNA) (Vectorlabs), purified rat anti-mouse CD3 (Biolegend) and PE labeled anti-mouse IgD (BD), or stained with Biotin anti-mouse CD138 (Biolegend) and PE labeled anti-mouse IgD at 4°C for 4 hours. Slides were then washed before streptavidin-Alexa Fluor 488 conjugate (ThermoFisher) and Alexa Fluor 647 labeled goat anti-rat secondary antibody (ThermoFisher) were added for 1 h at room temperature. Sections were covered with coverslip and visualized under an Olympus BX51 fluorescence microscope.
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10

In Vivo Neuron Labeling and Morphology Analysis

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Cells (an example shown in Figure 1F) were filled with biocytin during the in vivo recording using an electroporation method (Pinault, 1996 (link); Narayanan et al., 2014 (link)). After the experiment, the animal was perfused transcardially with 4% paraformaldehyde in 0.1 M phosphate buffer. The brain was removed and post-fixated for at least 24 h in 4% paraformaldehyde. Cell location and morphologies were determined by tissue staining with streptavidin-Alexa-Fluor 488 conjugate (S11223, Thermo Fisher Scientific) or DAB (3,3′-Diaminobenzidine tetrahydrochloridehydrate; D5637, Sigma-Aldrich, United States) as previously described (Groh and Krieger, 2013 (link)).
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