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Sample reducing agent

Manufactured by Thermo Fisher Scientific
Sourced in United States, Austria

The sample reducing agent is a chemical reagent used to prepare samples for various analytical techniques. It functions by reducing disulfide bonds in proteins, facilitating sample preparation and analysis.

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106 protocols using sample reducing agent

1

GLUT1 Protein Expression Analysis

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Western blot analysis was performed in LOVO and SW480 cells using the following primary antibodies: GLUT1 (21829-1-AP, Proteintech) and α-tubulin (T 6074, Sigma-Aldrich). Briefly, the cell pellet was mixed with LDS sample buffer (Life Technologies) and sample reducing agent (Life Technologies), according to the manufacturer’s protocol. Proteins extracted were loaded onto a SDS-PAGE (Novex 4–12% Bis–Tris gel, Life Technologies), transferred to a nitrocellulose membrane by iBlot (Life Technologies), and blocked 1 h with 1× TBST buffer (Fisher Scientific) with 5% w/v nonfat dry milk. The membranes were incubated in blocking buffer at 4 °C overnight with primary antibody against GLUT1 (1:1000) or 1 h at room temperature for α-tubulin (1:3000). Subsequently, the membranes were washed three times with Tris-buffered saline with Tween-20 (TBST) and incubated 1 h with secondary antibodies (1:5000; anti-rabbit sc-2004, Santa Cruz Biotechnology; or 1:3000; anti-mouse A9044, Sigma-Aldrich). The signal was obtained using the Novex ECL Chemiluminescent Substrate Reagent kit (WP 20005, Invitrogen) and the images were developed and quantified using the Chemidoc System (Bio-Rad).
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2

Protein Expression Analysis of PASMCs

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PASMCs were stimulated with rhOPG (50 ng ml−1) (R&D systems), alongside quiesced cells (negative control) for 10 and 60 min, before lysing. Cell lysates were mixed with sample buffer (Life Technologies, Carlsbad, CA, USA) and sample reducing agent (Life Technologies), denatured by heating and subjected to gel electrophoresis. The membranes were then incubated with primary antibodies against phospho-CDK4, phospho-HSP27, total mTOR, phospho-mTOR (1:500) and GAPDH (1:1000) (Cell Signalling Technology), CDK5 (1:500) (Abcam), or β-actin (1:1000) (Santa Cruz Biotechnology, Heidelberg, Germany). Membranes were then incubated with anti-Rabbit IRDye 800CW and anti-Mouse IRDye 800CW (Li-COR, Lincoln, NE, USA) and signal detection and band density quantification was performed using the LiCOR Odyssey SA system.
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3

Western Blot Analysis of NPC1 Protein

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Tissues were homogenized (Ultra-Turrax TP, IKA Labortechnik, Wasserburg, Germany) on ice in 300 µl of RIPA lysis buffer (Thermo) per 100 mg of tissue with 1× protease inhibitor cocktail (Thermo) and incubated for 30 min. Lysates were centrifuged at 14 000g, 4°C for 20 min and overall protein concentrations of the supernatant was determined by Pierce BCA Protein Assay (Life Technologies). Samples were incubated at 37°C for 30 min in 1× LDS sample buffer (Life Technologies) and 1× sample reducing agent (Life Technologies), after which 40 µg of protein were loaded per well in a NuPAGE Bis–Tris 4–12% polyacrylamide gel for protein separation via SDS-PAGE electrophoresis. Proteins were transferred to PDVF membrane at 400 mA for 1 h and membrane was blocked for 1 h at 4°C with 5% BSA in TBS + 3% Tween 20. Membranes were subsequently incubated overnight at 4°C with primary antibodies for NPC1 (1:10 000, ab134113, Abcam) and β-tubulin (1:2000, ab6161, Abcam) with 3% BSA in TBS + 3% Tween 20. After 3 washes in TBS, antibody staining was revealed using HRP-conjugated goat anti-rabbit IgG (1:2000, ab6721, Abcam) and goat anti-rat IgG (1:10 000, ab97057, Abcam) incubated for 2 h at RT in TBS + 3% Tween 20 with 3% BSA. Blots were developed with ECL system (SuperSignal West Pico, Life Technologies) and imaged using a Genegnome imager (Syngene, Cambridge, UK).
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4

Immunoprecipitation and Western Blot Analysis

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293-VnR cells and primary OCs generated from BMMs were lysed in modified radioimmune precipitation assay (mRIPA) buffer (50 mM Tris-Cl, 150 mM NaCl, 1% Nonidet P-40, 0.25% sodium deoxycholate) containing protease and phosphatase inhibitors (Complete Mini and Phosphostop, Roche). For immunoprecipitation, cell lysates were incubated with primary antibody bound to Dynabeads Protein G (Life Technologies) or anti-Flag M2 beads for Flag-tagged constructs (Sigma Aldrich). After 24 hrs at 4 °C the beads were washed in washing buffer (PBS, 0.01% Tween-20) and immunoprecipitated proteins eluted by adding sample buffer (NuPAGE LDS Sample buffer and Sample Reducing Agent) (Life technologies) and heating at 95 °C for 10 min. Protein samples were resolved by SDS-PAGE and transferred electrophoretically onto nitrocellulose membranes by a semi-dry system (Bio-Rad). Membranes were incubated with primary antibodies overnight. Immunoreactive proteins were visualized using enhanced chemiluminescence reagents (GE Healthcare). Image J was used to compare the density of bands in western blots.
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5

Western Blot Analysis of Mitochondrial Proteins

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Cells were washed with ice-cold PBS twice. Ice-cold RIPA buffer and protease inhibitor cocktail were added next, and cells were scraped from the plate and put into a 1.5-ml Eppendorf tube. Cells were placed on ice for 30 min, then centrifuged at 14,000 rpm for 15 min at 4 °C. Supernatant was collected and frozen at −80 °C until needed. Protein concentration was quantified with the Pierce BCA kit and a NanoDrop2000 (Thermo scientific) to measure. Samples were loaded on a 4–12% bis-tris gel with LDS Sample Buffer (Life technologies) and Sample Reducing Agent (Life technologies). The SDS-PAGE was run with MOPS buffer (Life Technologies), protein was transferred from gel to nitrocellulose membrane, which was then blocked for 1 h at room temperature using 5% BSA. Li-Cor/Odyssey and Image J are used for data collection and analysis. We used the following primary antibodies: anti-MRPL40 (1:500; Novus), anti-VDAC (1:1000; Neuromab), anti-cytochrome b (1:200; Santa Cruz Biotechnology), anti-MT-ND1 (1:500; Abcam), anti-OXPHOS cocktail (1:250; abcam), and β-actin (1:10,000; Cell Signaling Technology). The following Licor secondary antibodies were used all at 1:10,000: IRDye 680LT Goat anti-Mouse, IRDye 680RD Donkey anti-Rabbit, IRDye 800CW Donkey anti-Rabbit, IRDye 800CW Donkey anti-Goat, IRDye 800CW Donkey anti-Mouse.
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6

Whole-Cell Protein Extraction and Quantification

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Cells were separated from media by centrifugation at 300 g for 10 minutes. Cell pellets were washed twice in ice-cold PBS and finally resuspended in RIPA buffer with protease inhibitors. Lysates were sonicated in a Qsonica q700 sonicator at 70% amplitude for 10 minutes for total nuclei disruption. Non-soluble cell parts were removed by centrifugation at 12 000 r.p.m. for 20 minutes and 4 °C. A total of 20 µg of protein per sample was completed with Bolt™ LDS Sample Buffer (Life Technologies; B0007) and Sample Reducing Agent (Life Technologies; B0009), boiled for 5 minutes and cooled in ice for at least 1 minute, before they were loaded into polyacrylamide gels. Samples were transferred to a PVDF membrane, blocked with 5% (wt/vol) milk and incubated overnight at 4 °C with antibodies for OCT2 (Invitrogen; #39-5400), SHP-1 (Cell Signaling Technology; #3759) or GAPDH (Cell Signaling Technology; #2118). After incubation with the appropriate secondary antibody, blots were developed in a ChemiDoc MP Imaging System. Relative protein amount estimation was made using Fiji software [80 (link)].
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7

Mcl-1 Immunoprecipitation and Analysis

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MOLP-8 cells were treated with (Ra)-7 or DMSO control for 30 min. Then samples were centrifuged and pellet resuspended in ice-cold lysis buffer (10 mM HEPES pH 7.0, 150 mM NaCl, 1% CHAPS, 1 mM EDTA, 5 mM MgCl2, protease and phosphatase inhibitors cocktails (Roche)) and incubated for 20 min on ice with vortexing every 5 min. Next, samples were centrifuged and protein concentration assessed as mentioned above. Samples were pre-cleared for 30 min using rotation at 4 °C with 50% slurry of Protein A/G magnetic beads (ThermoFisher Scientific) followed by incubation with anti-Mcl-1 antibody (cat#MABC43, EMD Millipore) overnight at 4 °C with rotation. Protein A/G magnetic beads were then added for 1 h at 4 °C with rotation. Beads were washed four times with lysis buffer / PBS (1:1), then 10% sample reducing agent (LifeTechnologies) was added to each IP pellet followed by western blotting analysis.
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8

Western Blot Quantification of Protein

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Ten percent of each pellet was diluted in LDS sample buffer containing sample-reducing agent (LifeTechnologies), boiled for 5 minutes at 95°C, and separated by SDS-PAGE (LifeTechnologies) for 75 minutes at 150 V. Proteins were transferred from gels to a nitrocellulose membrane using the iBlot® Dry Blot System (LifeTechnologies). Membranes were incubated in Western dot blocking buffer (Molecular probes) for 30 minutes. Primary anti-OVA antibody (#ABIN400491; AntibodiesOnline) was incubated in wash buffer (Molecular Probes) overnight at 4°C in a rotating shaker. Secondary anti-rabbit antibodies labelled with biotin (Molecular Probes) were incubated for 60 minutes in wash buffer. Streptavidin coupled to Qdot 655 were incubated for 60 minutes in wash buffer. Membranes were analysed under ultraviolet light camera.
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9

Western Blot Analysis of HUVEC Proteins

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Ten μg of HUVEC lysates were mixed with LDS sample buffer and Sample Reducing Agent (Life Technologies) heated at 70 °C for 10 min. The proteins were resolved by NuPAGE Novex 4–12% Bis-Tris SDS PAGE Gel (Life Technologies) and transferred onto PVDF membranes (Immobilon-P IPVH00010, Millipore), blocked by 5% (w/v) nonfat dry milk/BSA in TBS with 0.1% Tween 20 for 1 h at RT followed by incubation over night at 4 °C with primary antibodies. Proteins of interest were detected with Rabbit IgG, HRP-linked whole Ab (from donkey) #NA934 or Mouse IgG, HRP-linked whole Ab (from sheep) #NA931, in 1: 15000 dilutions from GE Healthcare and visualized with using ECL Prime (#RPN2232, GE Healthcare) and exposed to ChemiDocTM MP Imaging System (Bio-Rad Laboratories). See Table S1 for antibody source and working dilutions.
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10

Protein Extraction and Western Blot Analysis

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Total protein from SH-SY5Y cells was exacted using a 1× TNE buffer [50 mm Tris–HCl (pH 7.4); 100 mM NaCl. 0.1; mM EDTA) plus 1% (v/v) Triton X-100 (Cat# T8787, Sigma-Aldrich) and protease inhibitor (Cat# P8340, Sigma-Aldrich). Lysates were kept in an orbital shaker incubator at 220 rpm at 4°C for 30 min and then centrifuged for 15 min at 13,000 g at 4°C. The supernatants were transferred to tubes and quantified by DC Protein Assay (Cat# 5000116, Bio-Rad, Milan, Italy). Subsequently, protein samples (60 μg of total protein) were heated at 70°C for 10 min in 1× LDS Sample Buffer (Cat# B0007, Life Technology) plus 1× sample reducing agent (Cat# B0009, Life Technology) and loaded on 10% Bis-Tris Protein Gels (Cat# NW00102BOX, Life Technology) and then transferred the membrane using Trans-Blot Turbo Mini 0.2 μm PVDF Transfer Packs (Cat# 1704156 Bio-Rad). The primary antibodies used were: (a) rabbit anti-TH (Cat# NB300-109, Novus Biologicals) and (b) an anti-α-tubulin antibody (1D4) (Cat# T6199; Merk). Reactive bands were detected by Clarity Western ECL Substrate (Cat# 1705061 Bio-Rad). The intensity of bands was analyzed on a ChemiDoc station with Quantity-one software (Biorad, Milan, Italy).
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