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E600 microscope

Manufactured by Nikon
Sourced in Japan, United States

The Nikon E600 microscope is a high-performance laboratory instrument designed for a variety of research and analysis applications. It features optical components and a modular design that enable clear and detailed observations. The E600 microscope provides reliable performance and versatility to support diverse scientific and industrial needs.

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119 protocols using e600 microscope

1

Hanging Drop Cell Aggregation Assay

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Transfected MDCK cells were trypsinysed, washed twice in PBS, diluted in DMEM and suspended as hanging drops from the lid of a 24 well culture dish. Wells were filled with sterile water to prevent drops drying (Thoreson et al., 2000 (link)). Culture dishes were kept in a humid 5% CO2 incubator at 37°C and cell aggregation was determined 4 h after plating. Cells in each drop were passed 10 times through a standard 200 μl Gilson pipet tip and photographed through a Nikon E600 microscope, using a 20X phase contrast objective. The number of isolated cells and cells forming aggregates were counted in five random fields from three independent experiments.
Adhesion assays were lightly modified from previously described (Orozco et al., 1983 (link)). Briefly, MDCK cells in suspension were mixed with washed erythrocytes (1:100 ratio). Cell mixture was incubated for 0.5, 1 and 2 h at 37°C, fixed with 2.5% glutaraldehyde for 30 min at 37°C and washed three-times with PBS. Erythrocytes were counterstained with 4.5 mM diaminobenzidine for 30 min at 37°C. Finally, adhered erythrocytes to each MDCK cell in ten random fields from three independent experiments were counted through a Nikon E600 microscope.
For inhibiting cell aggregation and erythrocytes adhesion, before experiments, 2 × 105 MDCK cells were incubated with 10 μg mAbAdh antibody or IgM isotype for 30 min at 37°C.
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2

Quantifying Astrocyte Reactivity in Hippocampus

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Area fractions of GFAP+ astrocyte elements in multiple regions of the hippocampus were measured, as described in our previous study [50 (link)]. This quantification was performed using Image J for Windows. Briefly, gray-scale images of different regions of the hippocampus were digitized using a 20X lens in a Nikon E600 microscope outfitted with a digital video camera attached to a computer. A binary image was created from each image by choosing a threshold value that retained all GFAP+ elements but no background. The area occupied by the GFAP+ structures in the binary image was then quantified through “Analyze” function in Image J. The area fraction of GFAP+ structures were calculated for the entire hippocampus by using data from all selected serial sections.
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3

Immunohistochemistry of PDAC Tissue

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Paraffin embedded zinc-formalin fixed tissue was sectioned and antigen retrieval was performed with citrate pH6.0 buffer
in a pressure cooker. Slides were blocked with serum-free protein block (X0909, Dako) for 1 hour at RT and incubated overnight at
4°C with the following antibodies FOXM1 (AF3975, Novus, 1:100), PRRX1 (NBP2-13816, Novus, 1:50) or GFP (ab13970, abcam,
1:250). Immunohistochemistry was performed using Biotinylated secondary antibodies, ABC kit (PK-6100) and DAB (SK-4100) from
Vector Labs. For immunofluorescence, slides were incubated with Cy-conjugated secondary antibodies (Jackson ImmunoResearch, 1:300)
for 1 hour at RT and nuclei were stained with DAPI. Image were acquired on a Nikon E600 microscope and processed with ImageJ
(1.51w) software. Antibody fidelity was verified by staining murine PDAC tissue in the absence of primary antibody (Supplementary Figure 1A). Human PDAC tissue was obtained from US Biomax,
Inc. (PA483).
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4

Ultrastructural Analysis of Plant Leaves

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Leaves were taken from nsl2 and wild-type plants was examined using a scanning electron microscope (SU3500; Hitachi) with a -20 °C cool stage under a low-vacuum environment.
Fresh leaves were collected and fixed in FAA (3.7% [v/v] formaldehyde, 50% [v/v] alcohol and 0.9 M [m/v] glacial acetic acid) for 16–24 h at 4 °C after vacuum infiltration. The fixed leaves were dehydrated with a graded alcohol series, infiltrated with xylene, and embedded in paraffin. Thin Sect. (8 μm thick) were prepared with a microtome (RM2245; Leica), then deparaffinized in xylene, and dehydrated through an alcohol series. The sections stained with 1% safranin (Amresco Inc., Framingham, MA, USA) and 1% fast green (Amresco Inc., Framingham, MA, USA), and a coverslip was mounted with neutral balsam. The sections were observed using an E600 microscope (Nikon).
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5

Quantifying Melanopsin Dendritic Complexity

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Epifluorescence images were acquired on a Nikon E600 microscope equipped with a SPOT-RT Slider digital microscope camera. For wholemounts, we collected z-stacks of confocal images separated in depth by 0.5 or 1.0 µm on a Zeiss LSM510 Meta or Leica TCS SP5 confocal laser scanning microscope. Confocal images were analyzed using Zeiss LSM Image Browser software and further processed with Adobe Photoshop and ImageJ software.
To assess the density of outer retinal dendrites, we selected 3–5 regions of interest (680 µm × 450 µm) in wholemount retinas from each age studied (P4, P8, P12 and adult). In each of these regions, we counted the number of outer retinal dendrites (ORDs), defined as melanopsin immunopositive dendrites that extended outward into the inner plexiform layer. These dendrites were subdivided into simple and complex varieties based on whether, after entering the INL, they terminated within it (simple) or extended into and coursed within the OPL (complex).
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6

Immunofluorescence Staining of Hybridoma and Tissue

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Supernatants of highly confluent hybridoma cultures were analyzed by IFA using HEp-2 cells which were fixed (4% PBS-formaldehyde) and permeabilized (0’05% PBS-Triton X-100); and cryosections from kidney, liver, external lacrimal and submandibular salivary glands obtained from NSG mice, fixed and permeabilized (Acetone); both blocked (PBS with 6% FBS). Then, cells and cryosections were incubated with 1/2 diluted supernatants. Anti-mouse IgG Fc Alexa488 (Life Technologies) and anti-mouse IgM Fc FITC (Southern Biotech) were used as polyclonal detection antibodies. Finally, both immunocytochemistry and immunohistochemistry slides were prepared using coverslips and aqueous mounting medium with anti-fading: 90 mL Glycerol (VWR), 10 mL PBS 1X, 500 mg Propyl-gallate (Sigma). Sections were visualized at 20X and 40x magnifications using NIKON e600 microscope.
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7

Fluorescent and Confocal Microscopy Imaging

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Routine fluorescent and/or live images were taken using Nikon Eclipse widefield microscope. Confocal images were taken using a Leica TCS SPE laser scanning system. Following immunohistochemical staining or haematoxylin and eosin staining, a Nikon E600 microscope was used to take colour photographs at 20 × magnification.
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8

Embryonic Tissue X-Gal Staining and Cryosectioning

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Embryos were dissected and fixed in 4% paraformaldehyde (PFA) for 1-3 hours at 4°C. Subsequently, embryos were washed three times for 15 minutes per wash using wash buffer (0.1 M phosphate buffer, 2 mM MgCl2 and 0.02% Nonidet P-40) and stained overnight at 37°C in X-Gal solution (in wash buffer: 5 mM potassium ferrocyanide [K3Fe(CN)6], 5 mM potassium ferricyanide [K4Fe(CN)6.3H2O], 1 mg/ml X-Gal [5-Bromo-4-chloro-3-indolyl β-d-galactopyranoside, Sigma] and 0.01% sodium deoxycholate for improved penetration). After staining, the embryos were washed with wash buffer three times, five minutes per wash and stored in 4% PFA at 4°C until further processing and imaging.
For sectioning, forelimbs of fixed X-Gal-stained embryos were washed three times in cold phosphate buffered saline (PBS) for 15 minutes per wash. They were then submerged in 30% sucrose in PBS and incubated in Tissue-Tek OCT compound before freezing. The tissue was sectioned at 10μm and allowed to air dry for one hour. Sections were stored at −80°C until mounted and imaged on the Nikon E600 microscope.
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9

Transwell Migration Assay for CDCs

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Transwells with polycarbonate membranes with 8.0 µm pores (Appleton Woods) were coated on the top and bottom of the membrane with fibronectin (0.33 µg/cm2). 4 × 103 CDCs were added in 0% fetal bovine serum (FBS, Hyclone) Modified Eagle's medium (MEM) to the top of the insert and placed into a well containing 20% FBS MEM. After 24 hours, the transwell insert was removed and media removed by aspiration. Nonmigratory cells were removed from the upper surface by wiping with a cotton bud. The transwell was rinsed in phosphate buffered saline (PBS) and cells fixed in 4% (wt/vol) Paraformaldehyde and 4% (wt/vol) Sucrose in PBS. The membrane was rinsed with PBS, cut out from the transwell and mounted upside down onto a slide using Vectashield mounting media with 4′,6‐diamino‐2‐phenylindole (DAPI) (Vectorlabs, Peterborough, UK, http://www.vectorlabs.com/). Images were captured at ×100 magnification using an E600 microscope (Nikon), DAPI positive cells were counted using ImageJ software and the average number of cells per field of view was calculated for each sample.
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10

Melanoma A375 Cell Signaling Pathway

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Melanoma A375 cells were harvested and homogenized in lysis buffer containing phenylmethylsulfonyl fluoride (PMSF). The primary antibodies used were p75NTR (#ab52987; Abcam, Cambridge, UK), NF‐κB p65 (#8242; CST, Danvers, MA, USA), IκBα (#9242; CST, Danvers, MA, USA), Phospho‐IκBα (#2859; CST, Danvers, MA, USA), caspase‐3 (ab214430; Abcam, Cambridge, UK), caspase‐9 (ab202068; Abcam, Cambridge, UK), Bax (ab32503; Abcam, Cambridge, UK), Bcl‐2 (ab32124; Abcam, Cambridge, UK), Lamin B1 (Beyotime, Shanghai, China), inhibitor of apoptosis protein 2 (c‐IAP2; #380798; ZEN BIO, Chengdu, China), bFGF (#381676; ZEN BIO, Chengdu, China) and β‐actin (Sino Biological, Beijing, China). β‐actin or Lamin B1 expression served as an internal control. For immunofluorescence analysis, cells were incubated with anti‐(human NF‐κB p65) IgG (1 : 100). The primary antibody was detected using a Cy3‐labeled IgG (1 : 100; Beyotime, Shanghai, China), and nuclei were stained with 4',6‐diamidino‐2‐phenylindole dihydrochloride (DAPI). Microscopic analysis was performed using a Nikon E600 microscope (Tokyo, Japan).
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