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69 protocols using ifn γ

1

Evaluation of Cytokine Secretion

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YTN5 and YTN16 cells were grown in 6-well plates and transfected with FOXM1 siRNA for 24 h. Cells were then exposed to 20 ng/mL IFNγ (Abcam, #9922) in 1 mL total volume for 24 h. The confluence of cells was equal at the end of the treatment with IFNγ, and the media was collected for analysis. ELISA kits for CCL2 (R&D Systems, # DY479-05), CXCL9 (R&D Systems, # DY492-05), and CXCL10 (R&D Systems, # DY466-05) were performed according to the manufacturer’s protocols, using 100 μL of media.
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2

Aortic Inflammation Evaluation Protocol

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To evaluate aortic inflammation, hematoxylin–eosin staining was performed according to the manufacturer’s instructions (Servicebio, Wuhan, China) [19 (link)]. In addition, immunohistochemistry (IHC) was employed to assess the expression of IL-4, IFN-γ, and PFKFB3 using previously described methods [19 (link)] and antibodies specific to IL-4 (Abcam, Cambridge, UK), IFN-γ (Abcam), and PFKFB3 (Abcam). Furthermore, multicolor immunofluorescence techniques were used to detect the co-expression of IFN-γ and PFKFB3 in CD68+ macrophages by Servicebio Technology (Wuhan, China) [20 (link)], using rabbit anti-human IFN-γ (Proteintech, Rosemont, IL), rabbit anti-human PFKFB3 (Abcam), and mouse anti-human CD68 (Abcam). The slides were scanned by a Pannoramic MIDI scanner (3DHISTECH, Hungary) and viewed using CaseViewer software v2.2. The positive areas in IHC images and mean fluorescence intensity (MFI) from immunofluorescence images were determined by three independent investigators (Rongyi Chen, Jinghua Wang, and Sifan Wu) using ImageJ software, for quantitative analysis.
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3

Infection of Mouse Bone Marrow-Derived Macrophages

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Bone marrow-derived macrophages (BMDMs) were generated from femurs and tibias of C57BL/6 mice. Bone marrow cells were cultured in RPMI1640 supplemented with 10% FCS, 100 U/ml penicillin, 100 μg/ml streptomycin, 2 mM L-glutamine, with the addition of 20% L929-cell–conditioned medium. After 5–7 days of culture, cells were seeded into 6-well tissue culture treated plates at a density of 2×106 cells/well in antibiotic-free medium overnight prior to infection. Macrophages were infected with live or heat–inactivated E. coli CFT073 at a multiplicity of infection (MOI) of 10 bacteria/macrophage. After washing, infected cells were incubated in fresh medium containing gentamicin (100 μg/ml) to limit the growth of extracellular bacteria. When indicated, macrophages were stimulated with 100 ng/ml LPS E. coli O111:B4 (Sigma-Aldrich, Saint Louis, MO) and IFN-γ (20 ng/ml, BioVision). After incubation for the indicated time points, culture supernatants and cells pellets were collected and assayed as indicated.
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4

Infection of Mouse Bone Marrow-Derived Macrophages

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Bone marrow-derived macrophages (BMDMs) were generated from femurs and tibias of C57BL/6 mice. Bone marrow cells were cultured in RPMI1640 supplemented with 10% FCS, 100 U/ml penicillin, 100 μg/ml streptomycin, 2 mM L-glutamine, with the addition of 20% L929-cell–conditioned medium. After 5–7 days of culture, cells were seeded into 6-well tissue culture treated plates at a density of 2×106 cells/well in antibiotic-free medium overnight prior to infection. Macrophages were infected with live or heat–inactivated E. coli CFT073 at a multiplicity of infection (MOI) of 10 bacteria/macrophage. After washing, infected cells were incubated in fresh medium containing gentamicin (100 μg/ml) to limit the growth of extracellular bacteria. When indicated, macrophages were stimulated with 100 ng/ml LPS E. coli O111:B4 (Sigma-Aldrich, Saint Louis, MO) and IFN-γ (20 ng/ml, BioVision). After incubation for the indicated time points, culture supernatants and cells pellets were collected and assayed as indicated.
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5

Reagents for Cell and Molecular Biology

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Cell culture media were purchased from Gibco (Carlsbad, USA), and their supplements provided by PAA Laboratories GmbH (Cölbe, Germany). Prokaryotic medium and supplements were ordered from Clontech (Takara, Japan) and Roth GmbH (Karlsruhe, Germany). Auranofin (AF), LPS, tetradecanoylphorbol acetate (TPA), hydrogen peroxide (H2O2), dimethylsulfoxide (DMSO), and the PPARγ ligands rosiglitazone and 2-chloro-5-nitrobenzanilide (GW9662) were purchased from Sigma-Aldrich (St. Louis, USA). IFNγ was ordered from BioVision Inc. (Milpitas, USA) and IL4 from Peprotech (Hamburg, Germany). Enzymes were obtained from New England Biolabs (Ipswich, UK) and polymerases from Agilent Technologies Deutschland GmbH (Böblingen, Germany) and Clontech (Takara, Japan). Further chemicals, if not indicated otherwise, were ordered from AppliChem GmbH (Darmstadt, Germany), Merck KGaA (Darmstadt, Germany), Promega GmbH (Mannheim, Germany), Roche Diagnostics (Basel, Switzerland), and Sigma-Aldrich.
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6

Cell Culture and Immunoassays Protocol

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Fetal bovine serum and Dulbecco’s Modified Eagle’s Medium (DMEM), penicillin, streptomycin used in the cell culture, and ProLong Diamond Antifade Mountant with 4′,6-diamidino-2-phenylindole (DAPI) were purchased from Gibco, Thermo Fisher Scientific, Inc. (Billings, MT, USA). IFN-γ was purchased from BioVision, Inc. (Milpitas, CA, USA) and TNF-α antibody was purchased from Signalway Antibody LLC (Greenbelt, MD, USA). Paraformaldehyde, 2′,7′-dichlorofluorescin diacetate (DCFH-DA), and DNCB were obtained from Sigma-Aldrich Chemical Corporation (St. Louis, MO, USA). MTT, sodium dodecyl sulfate (SDS), and Triton X-100 were purchased from USB Corporation (Douglasville, AG, USA). Acetone and isopropanol were purchased from J.T. Baker Co. (Phillipsburg, NY, USA). Western Bright ECL kit was purchased from Advansta Inc. (Menlo Park, CA, USA). The chemicals used in the experiments were of reagent grade. Antibodies including human IL-1β (EH0185), human IL-6 (EH0201), mouse TNF-α (EM0183), and mouse TSLP (EM0201) ELISA kits were purchased from Wuhan Fine Biotech Co., Ltd. (Wuhan, China).
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7

Inflammatory response modulation by plant extracts

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Cells were seeded in 96 well tissue culture plates (104/well) for cytotoxicity and total nitrite determination assays, 12 well tissue culture plates (105/well) for real-time PCR measurements, 6 well tissue culture plates (106/well) for Western blot analysis, and onto glass coverslips placed into 24 well tissue culture plates (2 × 104/well) for immunofluorescence. The next day, cells were pretreated with either plant extracts or test compounds, including vanillic acid, α-amyrin, β-caryophyllene, trans-ferulic acid, scopoletin (Sigma-Aldrich, Budapest, Hungary), and spilanthol (Santa Cruz) at the indicated concentrations for 2 h followed by treatment with LPS (10 ng/mL) (Sigma–Aldrich, Budapest, Hungary) and IFNγ (10 ng/mL) (Bio-Vision) for 24 h. Test compounds were first dissolved in DMSO (stock solution) and were then further diluted in culture medium for cell-based experiments. DMSO concentrations were at or below 1% (v/v) in cell cultures which did not have any effect on the parameters measured.
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8

Macrophage Polarization Inducers

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Epigallocatechin gallat (EGCG), Stattic and lipopolysaccharide (LPS) were purchased from Sigma-Aldrich (St. Louis, USA). IFNγ was from BioVision (Milpitas, USA). IL-4 was from Peprotech (Hamburg, Germany). IL-27 was obtained from Biolegend (Koblenz, Germany), IL-27 neutralizing antibody was from Invitrogen (Carlsbad, USA), and the IgG2a istotype control was from BioXCell (West Lebanon, USA). Macrophage colony-stimulating factor (M-CSF) and granulocyte-macrophage colony-stimulating factor (GM-CSF) were from ImmunoTools (Friesoythe, Germany). All reagents were dissolved according to the manufacturer's instructions.
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9

Antibody selection for Western blot, IF, and FC

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The following rabbit anti-mouse antibodies purchased from Abcam were used for Western blotting: Nucleolin (ab22758), EGFR (ab52894), CD36 (ab133625), IFNγ (ab133566), TLR3 (ab62566), Fibrillarin (ab5821), Cytochrome C (ab133504), F4/80 (ab100790), β-actin (ab8227), and GAPDH (ab181602). The goat anti-rabbit lgG-Alexa Fluor 488 (Cat. # A27034) was purchased from Thermo Fisher for immunofluorescence. The FITC-F4/80 (Cat# 123108) antibodies purchased from Biolegend were used for flow cytometry.
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10

Immunohistochemical Analysis of Prostatic Tissues

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Prostatic sections were fixed overnight in a 10% buffered paraformaldehyde solution. The tissues were ethanol-dehydrated and embedded in paraffin wax. Sections of 5 µm were cut with microtome, deparaffinized at 70°C for 20 min, incubated 5 minutes each in xylene, ethanol-xylene, and 100% ethanol. Finally, the samples were washed with distilled water to be processed for immunohistochemical analysis. Immunolabeling was done by using Mouse/Rabbit PolyDetector Plus HRP/DAB (BSB 0259; BioSB) Kit according to the manufacturer's instructions. The antibodies used were TNF-α (50 µg/mL) (Abcam 1793; Massachusetts, USA), IFN-γ (50 µg/mL) (Abcam 7740; Massachusetts, USA), CD45 (1 µg/mL) (Abcam 10558, Massachusetts, USA), IL-17 (1 µg/mL) (Abcam 79056, Massachusetts, USA), IL-6 (74 µg/mL) (Abcam 6672; Massachusetts, USA), IL-4 (0.5 µg/Ml) (Abcam 11524; Massachusetts, USA), and PCNA (100 µg/mL) (Santa Cruz-53407, Texas, USA). After the immunohistochemistry procedure, microphotographs were taken and the relative expression percentages were semiquantified in the Image-Pro Premier software 9.1.
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