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The H-300 is a centrifuge designed for general laboratory use. It is capable of separating samples at high speeds, providing researchers with a tool to fractionate cellular components or isolate specific molecules. The H-300 features a compact design and user-friendly controls, enabling efficient sample processing in a wide range of life science applications.

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126 protocols using h 300

1

Isolation and Characterization of Cardiac Progenitor Cells

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All animal work was approved by Emory University's Institutional Animal Care and Use Committee. CPCs were isolated from adult male Sprague-Dawley rats (about 250 g) by removing the heart and homogenizing the tissue. The tissue homogenate was further digested with 1 mg/mL type-2 collagenase Hank's balanced salt solution (Worthington Biochemical) and passed through a 70 μm filter. Dynabeads (Dynal) were conjugated to a c-kit antibody (Santa Cruz H-300). Cells were then incubated with beads for 2 hours at 37°C prior to magnetic sorting. Sorted cells were plated on a T-75 tissue culture flask and expanded to confluence in growth media (Ham's F-12 (Mediatech) + 10% fetal bovine serum (Atlanta Biologicals) + 0.1 μg/mL basic fibroblast growth factor (Sigma) + 10 ng/mL leukemia inhibitory factor and human recombinant (Sigma) + 1x penicillin-streptomycin-glutamine (Cellgro)). After clonal expansion, CPCs were characterized by flow cytometry of c-kit (Santa Cruz H-300). Only clones with >90% c-kit expression were used for subsequent studies.
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2

Immunoblot Analysis of Cellular Proteins

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Analysis of protein levels was carried out by immunoblot analysis of whole cell lysates using polyclonal antibodies against PARP1 (H-300, Santa Cruz), cyclin A (C-19, Santa Cruz), p53 (CM5, Novocastra, Newcastle, UK), p-p53 ser15 (9284, Cell Signaling), p38 (C-20, Santa Cruz), p-p38 (Thr180/Tyr182) (sc-17852, Santa Cruz), p16 (M-156, Santa Cruz), p-H2AX Ser139 (07-164 Upstate), p21 (M-19, Santa Cruz), PPM1D/WIP1 (H-300, Santa Cruz), and E2F1 (C-20, Santa Cruz), as well as monoclonal antibodies against pan-Ras-V12 (Ab-1, Calbiochem, Sigma-Aldrich, St. Louis, MO, USA), cyclin D1 (DCS6, Cell Signaling Technology, Inc., Danvers, MA, USA), α-tubulin (T5168, Sigma-Aldrich, St. Louis, MO, USA), β-actin (MAB1501, Millipore, Burlington, MA, USA), and Rb (554136, BD).
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3

Immunofluorescence Analysis of Telomere-Associated Proteins

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Cells were grown either in optically clear bottom 24-well plates or on acid-washed coverslips and were fixed with 4% paraformaldehyde for 15–20 minutes at room temperature. Following three washes with PBS, cells were permeabilized with 1% Triton X-100 for 10 minutes at room temperature, washed three times with PBS and blocked with 20% donkey serum for one hour at room temperature. Incubation with primary antibodies diluted in 5% donkey serum was carried out at 4 °C overnight. Primary antibodies used included: rabbit polyclonal anti-ATRX (Santa Cruz, H-300, 1:200 dilution), rabbit polyclonal anti-DAXX (Sigma-Aldrich, HPA001906, 1:100 dilution), mouse monoclonal anti-PML (Santa Cruz, PG-M3, 1:200 dilution), rabbit polyclonal anti-TRF2 (Bethyl, A300, 1:200 dilution), mouse monoclonal anti-V5 (Thermo Fisher, R960, 1:400 dilution), rabbit polyclonal anti-HA (Santa Cruz sc-805, 1:250 dilution), rabbit polyclonal anti-53BP1 (Novus NB-100–904, 1:200 dilution). Following primary antibody incubation, cells were washed three times with PBS and incubated with Alexa Fluor conjugated secondary antibodies (Jackson ImmunoResearch or ThermoFisher, 1:400 dilution) diluted in 5% donkey serum for one hour at room temperature. Cells were washed three times with PBS and mounted in mounting media with DAPI.
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4

Autophagy Modulation Reagents Protocol

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Rabbit polyclonal (L75423) and mouse monoclonal (LC3B-6) antibodies against LC3B were purchased from Sigma-Aldrich. Rabbit polyclonal antibodies against p62 (H-240) and Beclin 1 (H-300), as well as, a mouse monoclonal antibody against actin (C-4) were purchased from Santa Cruz Biotechnology. An additional rabbit polyclonal antibody against p62 was purchased from Cell Signaling (#5114). Rabbit polyclonal antibodies specific for N, M and RdRp BEV proteins, as well as a rat polyclonal antibody specific for Mpro were previously described [15 (link), 19 (link), 56 (link)]. Horseradish peroxidase-conjugated and Alexa Fluor-conjugated secondary antibodies were purchased from Sigma-Aldrich and Invitrogen, respectively.
3-Methyladenine (10 mM; 3-MA), wortmannin (5 μM; Wn), Earle´s balanced salt solution (EBSS), ammonium chloride (20 mM; NH4CL), thapsigargin (200 nM; TG) and dithiothreitol (2 mM; DTT) were purchased from Sigma-Aldrich. Hydroxychloroquine (17 μM; HCQ) was purchased from Sanofi-Synthelabo. Epoxomicin (200 nM; Epox) was purchased from Peptanova.
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5

Immunohistochemical Analysis of Gastric Cancer

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Tissue specimens from clinical GC samples and xenograft tumors derived from GC cells were fixed with 10% neutralbuffered formalin, and 4-μm paraffin sections were prepared. After rehydration, sections were stained with hematoxylin and eosin for histologic assessment, or were immunostained after antigen retrieval using a Bond-max automated immunostainer (Leica Microsystems, Newcastle upon Tyne, UK). The primary antibodies used were against FOXO1 (1:40, C29H4, Cell Signaling Technology), phospho-FOXO1Ser256 (pFOXO1; 1:60, Cell Signaling Technology), CD31 (1:100, M20, Santa Cruz Biotechnology), HIF-1α (1:50, provided by Dr. Jong-Wan Park at Seoul National University), VEGF (1:200, C1, Santa Cruz Biotechnology), and SIRT1 (1:100, H300, Santa Cruz Biotechnology). Antibody binding was detected with the Bond Polymer Refine Detection Kit (Leica Microsystems). All immunostained sections were lightly counterstained with Mayer’s hematoxylin. Throughout the above analysis, negative controls were prepared by omitting the primary antibody. The results of immunostaining were evaluated by two pathologists (Y.K. and J.-S.P.), who were blinded to the origin of the samples. For statistical analysis, the results of immunostaining for proteins were considered positive if immunoreactivity was seen in ≥ 10% (cytoplasmic pFOXO1 and nuclear SIRT1) or ≥ 5% (nuclear HIF-1α) of the neoplastic cells.
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6

Comprehensive Immunohistochemical Profiling

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For immunohistochemistry, sections were incubated with mouse monoclonal anti-human Ki-67 (clone 30-9), bcl2 (clone 124), p53 (clone DO-07), EGFR (clone 3C6), keratin 5/6 (clone D5/16B4) and keratin 14 (clone SP53) antibodies using an automatic immunostaining device (Ventana-Roche Diagnostics Milan, Italy) [41 (link)]. Serial sections were also incubated for 1 h with rabbit polyclonal anti-CRBP-1 (1:200; clone FL-135, Santa Cruz Biotechnology, Heidelberg, Germany), anti-CRABP-2 (1:300; Bethyl Laboratories, Montgomery, USA), anti-RARα (1:500; clone sc-551, Santa Cruz Biotechnology), anti-RARβ (cytoplasmic isoform β4; 1:100; clone ab53161 Abcam, Cambridge, UK) and anti-RXRα antibodies (1:500; clone sc-553, Santa Cruz Biotechnology), anti-keratin 1 (1:750; clone ab24643 Abcam), anti-Nox4 (1:500; H-300, Santa Cruz Biotechnology). Diaminobenzidine was used as final chromogen. Slides were also stained with a mouse monoclonal anti-CRBP-1 antibody (1:10, gifted from Dr ML Bochaton, University of Geneva, Switzerland), that gave similar results (not shown).
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7

Western Blot Analysis Protocol

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Western blot analysis was performed as we described previously [10 (link)]. Cell lysates in sodium dodecyl sulfate (SDS) lysis buffer (125 mM Tris-HCl [pH 6.8], 4% SDS, 0.004% bromophenol blue, and 20% glycerol) were separated on 10% SDS–polyacrylamide gel and electrophoretically transferred to PVDF membranes (Millipore Co., Billerica, MA) blocked with 5% non-fat dry milk in phosphate buffered saline– Tween-20 (0.1%, vol/vol) for 1 hour. The membranes were then incubated with a primary antibody against FOXO1 (1:1,000, C29H4, Cell Signaling Technology, Beverly, MA), hypoxia inducible factor-1α (HIF-1α; 1:500, H1α67, BD Biosciences, San Jose, CA), vascular endothelial growth factor (VEGF; 1:1,000, C1, Santa Cruz Biotechnology, Santa Cruz, CA), SIRT1 (1:1,000, H300, Santa Cruz Biotechnology), or β-actin (1:1,000, C4, Santa Cruz Biotechnology). Horseradish peroxidase-conjugated anti-rabbit IgG (1:2,000, Santa Cruz Biotechnology) or anti-mouse IgG (1:2,000, Santa Cruz Biotechnology) was used as a secondary antibody. Enhanced chemiluminescence (Amersham, Arlington Heights, IL) was used to detect the immunoreactive proteins. Equal protein loading was confirmed by β-actin.
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8

Western Blot Analysis of BLM and ATM Proteins

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For Western blot analyses, 4–9 × 106 cells were seeded in 100 mm plates and incubated overnight at 37 °C prior to a 4 h formaldehyde treatment (300 μM). For Western blot analyses of BLM protein, cells were harvested at indicated time points and disrupted in a lysis buffer (50 mM Tris–HCl, pH 8.0, 0.5% Nonidet P-40, 5 mM EDTA, 150 mM NaCl, 1 mM pepstatin A, and 1 mM PMSF). For detection of BLM and ATM proteins, aliquots of total cell lysate (35 or 50 μg, respectively) were run on a 3–8% NuPAGE® Tris-Acetate Gel (Life Technologies), followed by transfer onto PVDF membranes. The membranes were immunoblotted independently with the following primary antibodies: 3 h incubation with mouse monoclonal anti-ATM (GeneTex 2C1, 1:1000 dilution), overnight incubation with rabbit polyclonal anti-BLM (Santa Cruz H-300, 1:1000 dilution), and 1 h incubation with mouse monoclonal anti-α-tublin (Sigma clone B-5-1-2, 1:10,000 dilution). The membranes were then incubated for 1 h with appropriate secondary antibodies conjugated to horseradish peroxidase, and proteins were detected by the enhanced chemiluminescence detection system (Western LightningTM Plus-ECL from Perkin Elmer or Clarity Western ECL Substrate from Bio-Rad).
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9

TRAP Staining of Osteoclasts

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MuTuDCs were seeded at 104 cells/well onto glass culture slides (Becton Dickinson, 354108) in IMDM-glutamax supplemented with 10% fetal calf serum, 100 U/mL penicillin, and 100 μg/mL streptomycin in the presence of 25 ng/mL M-CSF and 100 ng/mL RANK-L and cultured for 12 days. Cytokines (M-CSF, RANK-L) were added at the beginning of the culture and then replenished every 3 days. For immunofluorescence staining of TRAP, cells cultured on glass slide were first incubated with anti-TRAP antibody (H-300, SantaCruz), then treated with the appropriate secondary biotinylated antibody and streptavidin labeled rhodamine. Nuclei were stained with DAPI. Observations were performed by epifluorescence using a Leica confocal microscope.
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10

Immunoprecipitation of SETDB1 and p53

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Immunoprecipitation after formaldehyde crosslinking was performed as previously described41 (link) with minor modifications. Briefly, cells were treated with 1% formaldehyde for crosslinking for 10 min at room temperature. Cells were harvested and lysed in 1 × RIPA buffer. The samples were sonicated until the lysate became clear, followed by centrifugation at 15,000g for 15 min at 4 °C. The supernatant was collected for immunoprecipitation (IP) using antibodies against SETDB1 (H-300; Santa Cruz, 1:250) and p53 (7F5; Cell Signaling, 1:500). The magnetic protein G beads after IP were washed three times with 1 × RIPA buffer and proteins were eluted with 2 × SDS-loading buffer. The samples were then incubated at 99 °C for 20 min before sample loading for SDS–PAGE. For non-crosslinking p53 immunoprecipitation, it was performed similarly except for the crosslinking procedure. Cells were transient transfected with wild-type p53 or p53R249S mutants. Forty-eight hours after transfection, cells were harvested and processed for IP using the Direct IP Kit (Pierce). For endogenous SETDB1 complex isolation with IP, the Nuclear Complex Co-IP Kit (Active Motif) was used for the procedure, with anti-SETDB1 antibody (Santa Cruz, 1:250) being added to the IP reaction.
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