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16 protocols using anti synapsin 1

1

Aβ Peptide Preparation and Antibody Analysis

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Amyloid beta (Aβ) 1–42 and scrambled Aβ peptide were from rPeptide. Dimethyl sulfoxide (DMSO) was from Fisher Scientific. Okadaic acid was from Sigma. The antibodies used in this study were purchased from Santa Cruz Biotechnology (anti-PSD95), GenScript Corporation (anti-Gapdh), Millipore (anti-puromycin), Abcam (anti-synapsin-I, anti-PSD95, anti-p-eIF4E and anti-MAP2) and Cell Signaling (anti-eIF2A, anti-p-eIF2A, anti-eIF4E, anti-PDI, anti-FMRP, anti-eEF2, anti-p-eEF2, anti-PP1, anti-PP2A-A, anti-PP2A-B, and anti-PP2A-C). HRP-conjugated secondary antibodies were from Cell Signaling and Jackson ImmunoResearch.
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2

Alzheimer's Disease Model in 5xFAD Mice

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5xFAD mice were obtained from Jackson lab and were bred in accordance with Emory Medical
School guidelines. The 5xFAD mice received vehicle or CF3CN dissolved in 5%
DMSO/0.5% methylcellulose at a dose of 3 or 10 mg/kg/day. Mice were housed in AAALAC
(American Association for Accreditation of Laboratory Animal Care)-Accredited facilities,
and this study was approved by the institutional Animal Care and Use Committees at Emory
University.
Anti-TrkB antibody was bought from Biovision (Milpitas, CA). Antiphospho-TrkB Y816
antibody was raised against [H]-CKLQNLAKASPV-pY-LDILG-[OH] (a.a. 806–822) (EM437
and EM438) as rabbit polyclonal antibody. Anti-synaptotagmin, anti-Aβ, and
antitubulin were from Sigma-Aldrich (St Louis, MO). Anti-Akt, anti-p-Akt, anti-ERK,
anti-p-ERK1/2, anti-synapsin I, anti-PSD95, and antispinophilin antibodies were bought
from Cell Signaling (Boston, MA). The Histostain-SP kit and the Aβ 1-42 ELISA kit
was from Invitrogen (Grand Island, NY). All chemicals not included above were purchased
from Sigma-Aldrich.
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3

Western Blot Analysis of Alzheimer's Markers

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15–75 μg of protein were resolved on 12% Bis-Tris or 4–12% gradient Bis/Tris gels (Life Technologies) and the proteins were transferred to nylon membranes (Bio-Rad). For Aβ WB analysis, the membranes were cross-linked with 0.5% glutaraldehyde solution before blocking. WB images were visualized by enhanced chemiluminescence (ECL). The images were captured by using BioMax film (Kodak, Rochester, NY, USA) or VersaDoc imaging system (Bio-Rad) and quantitated by using QuantityOne software (Bio-Rad). Primary antibodies were used at the following dilutions: 6E10 anti-Aβ (1:300, Convance), anti-PS1 (1:1,000, Cell Signaling Technology), anti-a-tubulin (1:1,000, Cell Signaling Technology), anti-CNPase (1:1,000, Cell Signaling Technology) and anti-BACE1 (1:1,000, Cell Signaling Technology), C66 APP C-terminal antibody (1:2000), AT8 anti-p-tau (1:100, Millipore), PHF1 anti-p-tau (1:500), anti-total tau (1:2,000, DAKO), anti-MAP2 (1:500, Millipore; 1:200, Cell Signaling), anti-NCAM (1:1000, Cell Signaling), anti-synapsin I (1:500, Cell Signaling), anti-HSP70 (1:1000, Enzo Life Sciences, Farmingdale, NY, USA) and anti-human mitochondrial antigen (h-mito, 1:500, Millipore).
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4

Immunohistochemical Analysis of Myelination and Neuroinflammation

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Fixed brains were paraffin-embedded and cut into 4-μm sections. After antigen retrieval, the sections were blocked and stained with anti-Oligo2 (1:500, Proteintech), anti-MBP (1:200, Abcam), anti-NG2 (1:100, Millipore), anti-Iba1 (1:500, Proteintech), anti-GFAP (1:500, Proteintech), anti-MAP2 (1:500, Proteintech), anti-PSD95 (1:500, Cell Signaling Technology), or anti-Synapsin I (1:500, Cell Signaling Technology). Then, the sections were incubated with a horseradish peroxidase (HRP)-conjugated anti-rabbit antibody (1:500, Abbkine, China) or (HRP)-conjugated anti-mouse antibody (1:500, Abbkine, China). The sections were developed using DAB peroxidase substrate (Beyotime Biotechnology, China). The sections were photographed with an Olympus AH-2 light microscope (× 200; Olympus). Images were imported into ImageJ for quantification. Briefly, the well-stained area on the images was first selected; then, the mean integrated optical density value of the area was calculated by ImageJ. According to the mean integrated optical density of the control group, the relative density of the EAE group and the MCC950 treatment group was calculated.
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5

Quantifying Hippocampal Synapse and Spine Density

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Rat hippocampal neurons (DIV 21) at low density were fixed by 4% PFA, permeabilized by 0.1% Triton X-100, and immuno-stained for synaptic proteins and visualized using a confocal fluorescence microscope. Anti-PSD95 (1:100; Santa Cruz Biotechnology), anti-Synapsin I (1:200; Cell signaling) antibodies and DAPI (Roche) were used. Synaptic clusters were calculated as the average number of clusters per 10 μm of dendritic length. AAV1-YFP was used to highlight dendritic spines of hippocampal neurons (DIV 21) at low density. Dendritic spines of primary and secondary basilar dendrites were counted and analyzed. Images were captured under a confocal microscope (Olympus).
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6

Antibodies for Synaptic Protein Analysis

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The following antibodies were used for western blot: Anti-neuroserpin goat polyclonal antibody G64 (generation and affinity-purification have been previously described13 (link)) (0.5 ug/ml); Anti-synaptophysin (Abcam ab32594, 1:1000); Anti-SNAP25 (Abcam ab41455, 1:1000); Anti-neuroserpin (Abcam ab46761, 1:5000 and ab32901, 1:2000); Anti-synapsin-I (Cell Signaling Technology D12G5, 1:1000); Anti-PSD-95 (Millipore clone EP2652Y, 1:1000); Anti-beta-actin (Millipore clone C4, 1:5000); Anti-PDI (StressMarq SPC114C, 1:2000); Anti-GFP (Clontech mouse Living Colors monoclonal antibody 632,459, 1:5000). The following antibodies were used for immunofluorescence: Anti-MAP2 (Sigma M4403, 1:200); Anti-cleaved caspase 3 (R&D Systems AF835, 1:100); Anti-synaptophysin (Abcam ab32594, 1:200); Anti-PSD-95 (Millipore MAB1598, 1:100); Anti-neuroserpin goat polyclonal antibody G64 (3 ug/ml).
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7

Quantifying Hippocampal Synapse and Spine Density

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Rat hippocampal neurons (DIV 21) at low density were fixed by 4% PFA, permeabilized by 0.1% Triton X-100, and immuno-stained for synaptic proteins and visualized using a confocal fluorescence microscope. Anti-PSD95 (1:100; Santa Cruz Biotechnology), anti-Synapsin I (1:200; Cell signaling) antibodies and DAPI (Roche) were used. Synaptic clusters were calculated as the average number of clusters per 10 μm of dendritic length. AAV1-YFP was used to highlight dendritic spines of hippocampal neurons (DIV 21) at low density. Dendritic spines of primary and secondary basilar dendrites were counted and analyzed. Images were captured under a confocal microscope (Olympus).
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8

mTOR and PKA Signaling Analysis

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The rodents were deeply anesthetized and euthanized by decapitation. The bilateral PFC regions were dissected out immediately and homogenized by sonic disruption. For cultured primary cells, after 4 hours drug treatment, the cells were harvested. The next steps for PFC tissues and primary cells were the same. The whole homogenate or cell lysate was centrifuged at 14,000 × g for 10 min, and the total protein concentration was assessed. The proteins were separated on SDS-PAGE gel and transferred to a nitrocellulose membrane. The membrane was blocked and then incubated with primary antibody (anti-mTOR, 1:1000, Cell Signaling; anti-pmTOR (Ser 2448), 1:1000, Cell Signaling; anti-pPKA Cα (Thr197), 1:1000, Cell Signaling; anti-PKA Cα, 1:1000, Cell Signaling; anti-PSD 95, 1:1000, Invitrogen; anti-GluR1, 1:1000, Abcam; anti-synapsin I, 1:1000, Cell Signaling; or anti-tubulin, 1:1000, Cell Signaling) at 4 °C overnight. The membrane was washed and incubated with secondary antibody (goat anti-Rb IgG, 1:5000, Abcam). The membrane was washed, chemiluminescence (ECL) reaction solution was added, and then the samples were exposed to X-ray film (Carestream) for visualization.
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9

Synaptic Protein Analysis by Immunoblotting

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Synaptosomal lysates (20μg per lane) were separated on 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred onto nitrocellulose membranes, incubated with anti-CaMKII (1:10,000, Cell Signaling, Beverly, MA, USA), anti-p-CMKII (1:2000, Cell Signaling, Beverly, MA, USA), anti-synapsin I (1:30,000, Cell Signaling, Beverly, MA, USA), and anti-p-synapsin I (Serine 603) (1:2000, GeneTex, Irvine, CA, USA) antibodies for overnight at 4 °C. This was followed by washing with Tris-buffered saline containing 0.1% Tween 20 (TBST) and incubation with horseradish peroxidase-conjugated secondary antibodies (1:5000, Cell Signaling, Beverly, MA, USA) for 2 h at room temperature. Immunoreactive bands were visualized by chemiluminescence (GeneTex, Irvine, CA, USA). Quantification was obtained by scanning densitometry of five independent experiments, and analyzed with Image J software (version 1.43, Bethesda, MD, USA) [30 (link)].
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10

Synaptic Protein Expression Analysis

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Tissues dissected from mice were homogenized. The procedures for synaptosome fractionation and western blot analysis have been described previously by our group [29 (link)]. Western blotting was performed using the standard protocol and the optical density of each band was quantified using ImageJ software. The primary antibodies used were as follows: anti-GFAP antibody was obtained from Novus Biologicals (Centennial, CO 80112, USA); anti-pentraxin 3 (PTX3), anti-GDNF, anti-BDNF, and anti-β-actin antibodies were obtained from Abcam (Cambridge, MA); anti-complement C3, anti-S100A10, anti-synapsin-1, and PSD-95 antibodies were obtained from Cell Signaling Technology (Danvers, MA, USA).
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