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14 protocols using h4784

1

Cardiac Tissue Preparation for Immunostaining

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Animals were anaesthetized in 0.1% MS222 (Sigma, A5040). Their hearts were excised, washed in 70% PBS with heparin (100 units ml−1; Sigma, H4784) and fixed with 4% paraformaldehyde for 2 h at room temperature (RT) or overnight at 4 °C (Santa Cruz, CAS 30525-89-4) for immunostaining and rinsed three times before being exposed to 10, 20 and 30% sucrose (Sigma, S0389) solutions at 4 °C. The tissues were then equilibrated to O.C.T. compound (Tissue-Tek, 4583) by immersing them in a 1:1 mixture of 30% sucrose and O.C.T., followed by 100% O.C.T. and finally frozen. Sections (10–14 µm) were prepared on a cryostat at −14 °C (Thermo, Cryostar NX70) in the frontal plane and stored at −80 °C.
To obtain fresh frozen tissue sections, hearts were mounted in 7% tragacanth (Sigma, G1128), dipped in pre-cooled 2-metyhlbutane (Sigma, 277258) and frozen in liquid nitrogen.
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2

Heparin Inhibition of HPV16-GFP Infection

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Cells (2×103) were plated in triplicate in a 96-well flat-bottom plate and incubated overnight. A dilution of HPV16-GFP PsV which infected cells in the range of 10–40% (amount varied between cell lines) was incubated with serially diluted concentrations of heparin (1mg/ml, three-fold serial dilutions to 0.001mg/ml; Sigma H4784) for 1 hr on ice. Samples were then added to the cells, and after 48 hr, cells were harvested and infection was assayed using flow cytometry as described above.
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3

Glioblastoma and Oligodendroglioma Cell Culture

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The patient-derived glioblastoma cell lines S24, T269, T325 and P3xx and BT088 oligodendroglioma cells were kept under stem-like neurosphere conditions (37 °C, 5.0% CO2): DMEM F-12 medium (31330-038, Invitrogen), B27 supplement (12587-010, Invitrogen), 5 μg ml−1 insulin (I9278, Sigma-Aldrich), 5 μg ml−1 heparin (H4784, Sigma-Aldrich), 20 ng ml−1 epidermal growth factor (rhEGF; 236-EG, R&D Systems), and 20 ng ml−1 basic fibroblast growth factor (bFGF; PHG0021, Thermo Fisher Scientific). S24 (human, female), T269 (human, male), T325 (human, male), and P3xx (human) were authentificated (Multiplexion GmbH, Germany). S24, T269, and T325 were further authenticated as glioblastoma by Illumina 850k methylation array56 (link). BT088 cells were obtained from ATCC (ATCC CRL-3417, RRID:CVCL_N708) (human, male). The molecular characterization of all used cancer cell lines can be found in Supplementary Tables S1 and S2.
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4

Pseudovirus Neutralization Assay for HPV31 and HPV35

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Samples were subjected to 5 serial dilutions, with the antibody titre resulting in an 80% reduction in the luciferase signal produced by control wells containing PsV and cells only estimated by interpolation. HPV antibody control reagents were included in each assay run60 alongside heparin (H-4784; Sigma-Aldrich) which was used as a positive inhibitor control: Median heparin concentration (μg/mL) against PsV HPV31 5.5 (IQR, 3.8 to 6.7; n = 6) and HPV35 3.1 (IQR, 2.5 to 3.3; n = 6); Median neutralisation titres of the positive antibody control reagent (high titre HPV16/18) against PsV HPV31 389 (IQR, 333 to 427; n = 12) and HPV35 46 (IQR, 42 to 53; n = 12). The negative antibody control reagent (HPV negative) had a titre of <40 in all assays (n = 24).
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5

Heparin Inhibits EV71 Viral Binding and Replication

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EV71-VP197R/L167G/E mixed viral population was pre-incubated with 300 μg/ml of soluble heparin sodium salt from porcine intestinal mucosa (H4784, Sigma-Aldrich, Merck, Switzerland) diluted in culture medium or with culture medium alone as control for 1 h at 37°C. Confluent monolayers of Vero, Caco-2, RD or SH-SY5Y cells were challenged with 50 μl of the pre-incubated virus-heparin or virus-alone mixture and virus binding and replication assays were performed.
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6

Colorectal, Lung, and Breast Cancer Cell Lines as Controls

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The colorectal cell lines HT-29 (ATCC HTB-38) and SW620 (ATCC CCL-227) were used as control for several tests, as well as the lung cancer cell line A549 (ATCC CRM-CCL-185), the mammary cancer cell lines SKBR3 (ATCC HTB-30) and BC-M1 (an established breast cancer cell line from a single disseminated tumor cell in the bone marrow of a patient with non-metastatic breast cancer patient)37 (link). HT-29 and SKBR3 cells were maintained in Dulbecco’s Modified Eagle’s medium (DMEM), 10% fetal bovine serum (FBS), and 1% penicillin/streptomycin. A549 cells were maintained in DMEM supplemented with 10 mM HEPES, 10% FBS and 1% penicillin/streptomycin. SW620 cells were maintained in RPMI 1640 with L-glutamine and 10% FBS, and the colon CTC lines and BC-M1 cells in CTC culture medium. Endothelial cells were cultured in M199 (M4530, SIGMA ALDRICH, St Louis, USA) containing 0.4 ng/ml endothelial growth factors (βECGF; E1388, SIGMA ALDRICH), 20 µg/ml heparin (H4784, SIGMA ALDRICH, Saint-Louis, USA), 1% penicillin/streptomycin and 20% FBS (endothelial cell medium).
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7

Melatonin Signaling in Avian Cells

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All of the blood samples were heparinized with 1000 UI/mL of sodium heparin (H4784, Sigma, St. Louis, MO, USA) in avian saline. After centrifugation at 1000× g for 20 min, the plasma was decanted and stored at −80 °C. Concentrations of MEL in plasma were measured by an enzyme-linked immunosorbent assay kit for anti-MEL (CEA908Ge, Uscn Life Science, Inc., Wuhan, China).
The cells were incubated with 1 μM of prazosin for 30 min followed by 250 pg/mL of MEL for 24 h, and 3-isobutyl-1-methylxanthin (IBMX 100 μM, T1713, Topscience, TX, USA) was added to the medium to prevent cAMP degradation before the cells were incubated for a further 30 min. The cells were collected and lysed with lysis buffer from the cAMP ELISA Kit (R&D Systems, Minneapolis, MN, USA). Further treatment of the samples was performed according to the manufacturer’s instructions.
The cells were incubated with 1 μM of prazosin or 10 μM of PD98059 for 30 min, followed by 250 pg/mL of MEL for 24 h. The supernatant was collected for IGF-I protein detection by the anti-chicken IGF-I ELISA kit (SEA050Ga, Uscn Life Science, Inc., Wuhan, China), according to the manufacturer’s protocols.
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8

Quantification of mouse Flt1 protein

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Quantification of mouse Flt1 protein levels was performed according to the manufacturer's instructions (R&D Systems, Quantikine MVR100). Briefly, MN explants of two E11.5 SCs were cultured in 250 μl starvation medium, either in absence or presence of 10 U ml−1 heparin (H4784, Sigma-Aldrich) for 20 h. Total cellular protein of MN explants was extracted using ELISA-extraction buffer. MN-CM was directly subjected to the assay.
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9

Evaluating EV-A71 HSPG-Dependent Replication

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To evaluate the involvement of HSPG-dependent replication by different EV-A71 strains, HSPG-binding sites on the viruses were blocked with low molecular weight heparin (LMWH; H4784, Sigma Aldrich). EV-A71 strains, 105 TCID50/100 μL, were pre-incubated with 5 mg/mL LMWH for 30 min at 37°C with 5% CO2. Subsequently 100 μL or 600 μL of the virus/LMWH mixtures were, respectively, added to the apical or basolateral compartment of the Transwell® inserts. The monolayers were incubated for 2 h at 37°C with 5% CO2 and subsequently washed three times with PBS. Fresh differentiation medium was added, and the monolayers were incubated for 10 min, after which the 0-h time point was collected, removing 100 μL from the apical and the basolateral side. At 24-, 48-, and 72-h post infection, a 100 μL sample was taken from the apical and the basolateral compartment and the collected volume was replaced with fresh differentiation medium.
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10

Comprehensive Lung Tissue Analysis Pipeline

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After IP injection of an overdose of ketamine (300 mg/kg) and xylazine (60 mg/kg), the abdominal wall and thorax of the mice were opened to expose the heart. The mice were perfused at 100 ml/h using a multichannel syringe pump (ProSense B.V.) via the right ventricle using Krebs-Henseleit buffer (Sigma-Aldrich, K3753) containing 10 U/mL heparin (Sigma-Aldrich, H4784) to rinse away the blood.
Lung tissue was processed for several purposes, i.e., real-time quantitative PCR (RT-qPCR), nCounter digital transcriptomics profiling, flow cytometry-based immune-profiling, scanning electron microscopy, immunofluorescence microscopy and histopathological staining.
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