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10 protocols using ab195117

1

Western Blot Analysis of Cell Signaling Proteins

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Protein was extracted from the platelets or brain homogenates using RIPA buffer supplemented with a protease inhibitor and quantified using a bicinchoninic acid (BCA) (23,227, Thermo, USA) kit. Equal amounts of protein from each sample were separated using 8% SDS-PAGE, transferred onto a nitrocellulose membrane, and incubated overnight with antibodies targeting p-RIP1 (Ser166, 1:1000, 53,286, CST, USA), RIP1 (1:1000, ab202985, Abcam, USA), p-RIP3 (Ser232, 1:1000, ab195117, Abcam, USA), RIP3 (1:1000, ab62344, Abcam, USA), p-AKT (Ser 473, 1:1000, 4060 T, CST, USA), AKT (1:1000, 4691S, CST, USA), Fosb ( 1:1000, ab11959, Abcam, USA), Jun (1:1000, ab40766, Abcam, USA), Jund (1:1000, ab181615, Abcam, USA), Fos (1:1000, ab222699, Abcam, USA), Junb (1:1000, 128,878, Abcam, USA), and β-actin (1:5000, A5441, Sigma) in Tris buffered saline containing 0.2% Tween-20 (TBST) and 5% nonfat dry milk at 4 °C. After washing with TBST, the membranes were incubated with 1 μg/ml goat anti-rabbit IRDye 800CW or goat anti-mouse IRDye 800CW (Licor Odyssey, USA). The positive bands were detected using the Odyssey infrared imaging system (LI-COR Biosciences, USA), and signal intensity was quantified using ImageJ software and normalized to that of β-actin.
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2

Immunohistochemical Analysis of Thrombosis

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IVC tissues containing thrombus were fixed on slides and rinsed with PBS. The slides were blocked in 5% BSA in PBS for 1 h and treated with the primary antibodies at 4°C overnight, namely, rabbit anti-MLKL (p-S345) antibody (1 : 1000; #ab196436; Abcam, Cambridge, United Kingdom), rabbit anti-RIP3 (p-S232) antibody (1 : 50; #ab195117; Abcam, Cambridge, United Kingdom), and rabbit anti-IL-17B antibody (1 : 100; #ab79056; Abcam, Cambridge, United Kingdom). The slides were incubated at 37°C for 40 min with the secondary antibody (goat anti-rabbit IgG antibody, Abcam, Cambridge, United Kingdom) after washing with PBS three times and stained with hematoxylin for 5 min. The images were revealed using HRP-DAB and observed using a Lab.A1 microscope at 200x (Carl Zeiss GmbH, Oberkochen, Germany). The positive expression of the protein was observed by an optical microscope and showed brownish-yellow particles. Five high-power fields were randomly selected for observation using the double-blind method. The Image-Pro Plus 6.0 software (Media Cybernetics, Inc., Rockville, MD, USA) was used to calculate the positive rate.
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3

Detecting RIPK3 and MLKL Oligomers

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Western blotting experiment was described previously (Zhao et al., 2019 (link)), and the detection of RIPK3 or MLKL oligomers was performed according to the method described by Wang et al. (2019) (link). The following antibodies were used for the experiments: anti-FADD (1:1000, 610399) and anti-RIPK1 (1:3000, 610458) (BD Transduction Laboratories, San Jose, CA); anti-phospho-RIPK3 (1:1000, ab195117), anti-MLKL (1:1000, ab172868), anti-phospho-MLKL (1:1000, ab196436) (Abcam, Cambridge, MA, United States); anti-RIPK1 (1:3000, 3493), anti-RIPK3 (1:3000, 15828), anti-Myc tag (1:2000, 2276), anti-HA tag (1:2000, 3724), anti-Flag tag (1:2000, 14793), anti-TRAF2 (1:1000, 4724), anti-phospho-RIPK1 (1:1500, 31122) and anti-phospho-RIPK3 (1:1000, 57220) [Cell Signaling Technology (CST), Beverly, MA]; anti-TRADD (1:1000, ABP52634) and anti-GAPDH (1:1500, ABP52783) (Abbkine, Redlands, CA, United States); anti-β-actin (1:3000, A5441) (Sigma-Aldrich). All western blot assays were performed three times, and the representative results are shown.
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4

Western Blot Analysis of Necroptosis Markers

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Brain samples around the hematoma were collected and lysed in RIPA lysis buffer (Beyotime, Shanghai, China). Western blotting was performed as previously described (56 (link)). Protein samples (40 μg/lane) were separated by 10% sodium dodecyl sulfate polyacrylamide gel and electrotransferred to polyvinylidene fluoride membranes (Millipore, Burlington, MA, USA). The membranes were blocked at room temperature for 1 h and then incubated overnight with primary antibodies, including: anti-RIP1 antibody (1:1000, Cell Signaling Technology, CST#D94C12), anti-RIP3 antibody (1:1000, Cell Signaling Technology, CST#D4G2A), anti-MLKL antibody (1:200, Santa Cruz Biotechnology, sc-293201), anti-TNFAIP3 (A20) antibody (1:1000, Abcam, ab13597), anti-RIP3 (phospho S232) antibody (1:1000, Abcam, ab195117), anti-MLKL (phosphor S345) antibody (1:1000, Abcam, ab196436), anti-NLRP3 (1:1000, Abcam, ab98151).
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5

Monoclonal Antibodies for Apoptosis Signaling

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Mouse monoclonal antibodies against AQP1 (ab9566) and RIPK1 (ab72139) were purchased from Abcam (Cambridge, MA). Mouse monoclonal antibodies against RIPK1 (610458), caspase-8 (9746), and RIPK3 (sc-374639) were bought from BD Biosciences (San Jose, CA), Cell Signaling Technology (Danvers, MA), and Santa Cruz Biotechnology (Dallas, TX), respectively. The rabbit monoclonal antibody against p-MLKL (S345) (ab196436), p-RIPK3 (S227) (ab209384) and p-RIPK3 (S232) (ab195117), and rabbit polyclonal antibody against RIPK1 (ab106393) and MLKL (ab194699) were purchased from Abcam. The rabbit polyclonal antibody against cleaved caspase-3 (9661) and caspase-3 (9662) were bought from Cell Signaling Technology. The rabbit monoclonal anti-β-actin antibody (AC026) and anti-α-tubulin antibody (AC013) were from Abclonal (Wuhan, China). The cell transfection regent (F231-02) was purchased from TransGen Biotech (Beijing, China). The point mutation plasmids of RIPK1 were constructed using the HiFi HotStart DNA Polymerase (KAPA Biosystems, Roche, Switzerland).
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6

Western Blot Analysis of Necroptosis Markers

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RIPA buffer, phosphatase, and protease inhibitors (MEC, China) was added to mouse lung or cell samples, and being lysed on ice plate. An equal amount of protein sample was added to each well for electrophoresis in SDS-PAGE, and then transferred to a polyvinylidene fluoride membrane (Millipore, USA). At room temperature, the membrane was washed with TBST and sealed in 5% skimmed milk for 60 min. The membrane was washed three times for 5 min each time and then incubated with primary antibodies against RIP1 (1:500 dilution, 3493, Cell Signaling Technology, USA), RIP3 (phospho S232) (1:500 dilution, ab195117, Abcam, USA), RIP3 (1:500 dilution, sc-374639, Santa-Cruz, USA), MLKL (phospho S345) (1:1,000 dilution, ab196436, Abcam, USA), MLKL (1:500 dilution, sc-293201, Santa-Cruz, USA), and GAPDH (1:1,000–1:2,000 dilution, CST, USA) at 4°C overnight. After membranes were incubated with appropriate secondary antibodies for 1 h at room temperature, protein bands were visualized using enhanced chemiluminescence (Biosharp, Shanghai, China). Signal quantification was performed with ImageJ software.
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7

Western Blot Analysis of Cell Signaling Proteins

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Tissues were homogenized in RIPA buffer (98065; Cell Signaling Technologies). 40 µg of denatured proteins were loaded onto 10% Mini-PROTEAN TGX gels (456-8034, Bio-Rad) for SDS-PAGE. Proteins were transferred on polyvinylidene difluoride (PVDF) membrane (BR20160719, Bio-Rad) using a Trans-Blot Turbo Transfer System (Bio-Rad). Membranes were blocked and probed with: mouse anti-mouse GAPDH (ab8245, Abcam), rabbit anti-mouse β-actin (sc-130656, Santa Cruz Biotechnology), mouse anti-mouse HMGB1 (ab11354, Abcam), rabbit anti-mouse phosphoRIPK3 (ab195117, Abcam), rabbit anti-human phosphoRIPK3 (ab209384, Abcam), rabbit anti-mouse/human pDRP1 (Ser616, PA5-64821, Thermo Fisher Scientific), rabbit anti-mouse MMP12 (22989-1-AP, Proteintech) and rabbit anti-human MMP12 (abx102901, Abbexa) 1:1000 dilution each. Secondary biotinylated antibodies goat anti-rabbit (1:5000 dilution; A0545, Sigma Aldrich) or goat anti-mouse (1:5000 dilution; A9917, Sigma Aldrich) were applied before revelation with Clarity Western ECL (#170-5060, Bio-Rad) and imaged on a ChemiDoc Imaging System (Bio-Rad). Images have been cropped for presentation. Mean band intensity was quantified (ImageJ) and normalized to GAPDH or β-actin as indicated.
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8

Western Blot Analysis of Necroptosis Markers

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Cells under different experimental conditions or freshly isolated intestinal tissues were harvested and lysed immediately with cytoplasm extraction buffer. Protein concentration was quantified using a Bradford assay kit (Thermo Fisher Scientific, Carlsbad, CA, USA). Total cell lysates or tissue lysates were separated by sodium dodecyl sulfate–polyacrylamide gel electrophoresis and transferred to polyvinylidene difluoride membranes (Amersham Biosciences, Buckinghamshire, UK) for blotting with appropriate primary antibodies against β-actin (#8457 at 1:1000, Cell Signaling Technology, Inc., Danvers, MA, USA), human RIPK-3 phospho-S227 (ab209384 at 1:2000, Abcam), human MLKL phospho-S358 (ab187091 at 1:1000, Abcam) and mouse RIPK3 phospho-S232 (ab195117 at 1:1000, Abcam). After being washed in TBS, the blots were incubated with horseradish peroxidase-conjugated goat anti-rabbit antibodies (#7077 at 1:2000, Cell Signaling Technology) for 1 h at room temperature. After a final wash as described above, the corresponding secondary antibodies were visualized using enhanced Pierce™ ECL Western Blotting Substrate (Thermo Fisher Scientific). Signals were quantified with a chemiluminescence detector and the accompanying densitometry software (Tanon, Shanghai, China).
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9

Immunoblot Analysis of Cell Stress Signaling

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Following ELF-EMF exposure, cells were collected and homogenized using lysis buffer (10 mM Tris-Cl pH 7.4, 150 mM NaCl, 1% Triton-X100 and proteases inhibitor cocktail). Achieved cell lysates were than subjected to centrifugation at 15,000 g for 30 min at 4 °C and supernatant was collected for further analysis. Proteins in supernatant were then separated by SDS-PAGE and transferred on a PVDF membrane for further visualization. Using a 5% bovine serum albumin, blotted PVDF membranes were blocked for 1 h and then probed using primary antibodies against caspase-3 (ab4051, Abcam), caspase-8 (ab25901, Abcam), caspase-9 (ab52298, Abcam), RIPK1 (sc-133102, Santa Cruz Biotechnology), phosphorylated RIPK1 (p-RIPK1) (#44590, CST), RIPK3 (#13526, CST), phosphorylated RIPK3 (p-RIPK3) (ab195117, Abcam, Cambridge, MA, United States), MLKL (ab172868, Abcam), phosphorylated MLKL (p-MLKL) (ab196436, Abcam) and GAPDH (sc-32233, Santa Cruz Biotechnology). Following addition of secondary antibodies and washing with TBST for 3 times, the immunoreactive bands were visualized utilizing a ChemiDoc XRS Image System (Bio-Rad Laboratories, Hercules, CA, USA). Obtained images were then quanti ed ImageJ analysis software.
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10

Immunoblot Analysis of Cell Stress Signaling

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Following ELF-EMF exposure, cells were collected and homogenized using lysis buffer (10 mM Tris-Cl pH 7.4, 150 mM NaCl, 1% Triton-X100 and proteases inhibitor cocktail). Achieved cell lysates were than subjected to centrifugation at 15,000 g for 30 min at 4 °C and supernatant was collected for further analysis. Proteins in supernatant were then separated by SDS-PAGE and transferred on a PVDF membrane for further visualization. Using a 5% bovine serum albumin, blotted PVDF membranes were blocked for 1 h and then probed using primary antibodies against caspase-3 (ab4051, Abcam), caspase-8 (ab25901, Abcam), caspase-9 (ab52298, Abcam), RIPK1 (sc-133102, Santa Cruz Biotechnology), phosphorylated RIPK1 (p-RIPK1) (#44590, CST), RIPK3 (#13526, CST), phosphorylated RIPK3 (p-RIPK3) (ab195117, Abcam, Cambridge, MA, United States), MLKL (ab172868, Abcam), phosphorylated MLKL (p-MLKL) (ab196436, Abcam) and GAPDH (sc-32233, Santa Cruz Biotechnology). Following addition of secondary antibodies and washing with TBST for 3 times, the immunoreactive bands were visualized utilizing a ChemiDoc XRS Image System (Bio-Rad Laboratories, Hercules, CA, USA). Obtained images were then quanti ed ImageJ analysis software.
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