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6 protocols using ketoconazole

1

Pharmacological Inhibition Assay

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RPMI 1640, penicillin/streptomycin solution, fetal bovine serum (FBS) were obtained from Invitrogen (Camarillo, CA, USA). Ketoconazole (KTZ) and sunitinib were purchased from Selleckchem (Houston, TX). U0126 and SB203580 were procured from Promega (Madison, WI, USA) and SP600125 from Sigma (Sigma-Aldrich, St. Louis, MO, USA). Unless otherwise indicated, all other drugs were purchased from Sigma (St. Louis, MO, USA)11 (link),12 (link).
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2

Comprehensive Analytical Reagents Protocol

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Water (LC-MS Grade, Optima; 10509404), Acetonitrile (LC-MS Grade, Optima; 10001334), Methanol (LC-MS Grade, Optima, A456-212) and Formic acid (LC-MS Grade, Thermo Scientific Pierce; 13454279) were purchased from Fisher Chemicals. Human cell lysate (MS Compatible Human Protein Extract, Digest, V6951) and Trypsin (Sequence grade, V511X) were purchased from Promega. DL-Dithiothreitol (BioUltra, 43815), Iodoacetamide (BioUltra, I1149) Ammonium Bicarbonate (Eluent additive for LC-MS, 40867), Yeast Nitrogen Base Without Amino Acids (Y0626) and glass beads (acid washed, 425-600 µm, Sigma, G8772) were purchased from Sigma Aldrich. Urea (puriss. P.a., reag. Ph. Eur., 33247H) and Acetic Acid (Eluent additive for LC-MS, 49199) were purchased from Honeywell Research Chemicals. Rosuvastatin Calcium (S2169), Fluvastatin Sodium (S1909), Pyrimethamine (S2006), Pitavastatin Calcium (S1759), Pemetrexed Disodium Hydrate (S7785), Pravastatin Sodium (S3036), Clotrimazole (S1606), Miconazole Nitrate (S1956), Lovastatin (S2061), Ketoconazole (S1353), Atorvastatin (S2077), Methotrexate Disodium (S5097), Simvastatin (S1792), Uniconazole (S3660), Itraconazole (S2476) were purchased from Selleck chemicals and Pralatrexate (A4350) was purchased from APExBIO. Control samples for SARS-CoV-2 study were prepared from commercial Human Plasma (EDTA, Pooled Donor, Genetex GTX73265).
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3

Ketoconazole Enhances Radiation Therapy in Tumor Xenografts

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Stably transfected cells (5 × 106) were implanted subcutaneously into the backside of nude mice or C57BL/6 mice (4–6 weeks old, male); IR facilitation was performed on days 12 and 13 after implantation. When the volume reached 200 mm3, mice were randomly divided into four groups for further treatment. Ketoconazole (purchased from Selleck) was dissolved in 30% propylene glycol, 5% Tween 80, and 65% D5W and injected intraperitoneally at the beginning of the day before IR and maintained every two days at a concentration of 20 mg/Kg [13 (link)]. Tumor volume (mm3) was measured and calculated as follows: tumor volume = L × W × H/2, where L is length, W is width, and H is height. When the volume reached 1000 mm3, tumors were harvested and dipped into formalin immediately for further analysis. We were blinded to the group during the experiment.
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4

Establishment of Radio-Resistant Liver Cancer Cell Lines

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The HCC cell lines were purchased from Shanghai Cell Bank. Acquired radio-resistant cell lines MHCC97H IR-R and MHCC97L IR-R were constructed as follows [13 (link)]. These cells were cultured in DMEM medium supplemented with 10% fetal bovine serum (Gbico, America) and maintained at 37 °C and 5% CO2. Lentiviral vectors and short hairpin RNA were designed and constructed by WZ Biotech (Jinan, China). Flag-tagged HK2 overexpression vectors (LV-HK2) and control vectors (LV-RFP) were transferred into MHCC97H, MHCC97L, and H22. Consistently, HK2 shRNA (shHK2) and control short hairpin RNA (shGFP) were transfected into MHCC97H IR-R, MHCC97L IR-R, and QGY7701. AIMP2 overexpression vectors (LV-AIMP2) and control vectors (LV-NC) were transferred into MHCC97H (LV-RFP&LV-HK2) and MHCC97L (LV-RFP&LV-HK2) cells. The small interfering RNA (siRNA) oligonucleotides constructed by Ribobio (Guangzhou, China) contain siAIMP2 (three targets) and siControl (siNC). The plasmid of mCherry-GFP-LC3 II was constructed by Hanyi Biotech (Guangzhou, China). Both were transfected into cells using Lipofectamine 3000 (Thermo Fischer Scientific) transfection reagent following the supplier’s recommendations. Ketoconazole, chloroquine (CQ) and MG-132 were all purchased from Selleck and dissolved in DMSO.
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5

Pituitary Organoid Cytotoxicity Screening

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Organoids were grown in Matrigel™ domes within 96-well round-bottom culture plates. Recombinant human SHH was removed from the pituitary organoid growth media, 24 h prior to drug treatment. Organoids were treated with either vehicle (DMSO), cabergoline (Selleckchem S5842), ketoconazole (Selleckchem S1353), roscovitine (Selleckchem S1153), GANT61 (Stemcell Technologies 73692), pasireotide (TargetMol TP2207), mifeprostone (Selleckchem S2606), etomidate (Selleckchem S1329), mitotane (Selleckchem S1732), metyropane (Selleckchem S5416), or osilodrostat (Selleckchem S7456) at concentrations of 0, 1, 10, 100, 1000, and 10,000 nM, for 72 h. The percentage of cell viability was measured using an MTS assay (Promega G3580). Absorbance was measured at 490 nm and normalized to the vehicle. Concentrations were plotted in a logarithmic scale, and a nonlinear dose response curve regression was calculated using GraphPad Prism. An IC50 value for each drug treatment was determined based on the dose response curve, using GraphPad Prism analysis software.
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6

Hepatic Organoid Exposure to Drugs

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Neratinib (catalogue no. S2150), nilotinib (catalogue no. S1033), ketoconazole (catalogue no. S1353), amiodarone HCl (catalogue no. S1979) and fluticasone propionate (catalogue no. S1992) were obtained from Selleckchem, Methadone stock solution (1 mg/ml) was provided by Department of Chemistry, University of Oslo. Stock solutions of drugs were prepared in DMSO in concentration 10 mM. 3D PHH (at day 7 after thawing) and 3D iHLC (after 24 days of differentiation) were incubated with indicated compounds for 24 h and 48 h, diluted in the concentration 10 μM in serum-free William's E media, supplemented with 1 % (v/v) ITS, 0.1 μM Dexamethasone. Control organoids were incubated in the same medium with 0.1 % (v/v) DMSO.
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