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Helper 2

Manufactured by Genechem
Sourced in China

Helper 2.0 is a versatile laboratory equipment designed to assist researchers and technicians in various laboratory tasks. The core function of Helper 2.0 is to provide automated support for various laboratory processes, enhancing efficiency and accuracy. The specific details and capabilities of this product are not available for an unbiased and factual description.

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6 protocols using helper 2

1

Lentiviral Vector Construction for GBAS Knockdown

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The package of lentivirus was used 3rd generation system. The GV115 (pGCSIL-GFP; Shanghai GeneChem Co., Ltd.) lentivirus was used for constructing GBAS-knockdown vectors. The short hairpin RNA (shRNA/sh) sequence targeting GBAS used was as follows: Forward, 5′-CCGGCCATGTGAAAGTCCTGTTGAACTCGAGTTCAACAGGACTTTCACATGGTTTTTG-3′ and reverse, 5′-AATTCAAAAACCATGTGAAAGTCCTGTTGAACTCGAGTTCAACAGGACTTTCACATGG-3′. After cloning the shGBAS or shCtrl sequence into the GV115 vectors, the lentivirus construction system, including the GV115-GBAS vector (20 µg), and Helper 1.0 (15 µg; Shanghai GeneChem Co., Ltd.) and Helper 2.0 (10 µg; Shanghai GeneChem Co., Ltd.) packaging vectors, were co-transfected into 293T cells using Lipofectamine® 2000 (Invitrogen; Thermo Fisher Scientific, Inc.). Following 72 h of transfection, the freshly harvested virus supernatants were collected by ultracentrifugation (25,000 × g at 4°C for 2 h) and subsequently stored at −80°C. The multiplicity of infection for EC cell transfection was 20. After 72 h, the transfection efficiency of GBAS knockdown (shGBAS) was determined using reverse transcription-quantitative PCR (RT-qPCR) and western blotting.
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2

Establishing QKI-5 Overexpression Cell Lines

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To generate A549 and H1299 cell lines stably overexpressing QKI‐5, a ~ 1‐kb coding sequence (GenBank Accession number: NM_006775) of QKI‐5 was subcloned into a GV358 lentiviral expression vector (GeneChem Inc., Shanghai, China) containing a C‐terminal 3× Flag tag using endonucleases AgeI/BamhI (Fermentas, Glen Burnie, MD, USA). Primers used for amplifying the coding sequence of QKI‐5 were listed in Appendix Table S5. The empty lentivirus vector was served as a negative control. Subsequently, the QKI‐5 expression construct or empty vector was co‐transfected with packaging plasmids Helper 1.0 and Helper 2.0 (GeneChem Inc.) into HEK 293T cells using Lipofectamine 3000 (Invitrogen). At 48 h post‐incubation in DMEM with 10% FBS, the packaged lentiviruses were collected and used to infect A549 and H1299 cells for 72 h. Finally, Flag‐tagged QKI‐5‐overexpressing A549 and H1299 stable cells were selected with 2 μg/ml puromycin (Solarbio Lifesciences, Beijing, China).
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3

Knockdown of ASAP2 in Macrophages

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The shRNAs were chemically synthesized by Genechem, China. Oligos for shRNA targeting ASAP2 (target sequence: shNC TTCTCCGAACGTGTCACGT; shASAP2-1 ccGGTGTCATTTGTGCACTTT, shASAP2-2 ccTGGATAAACAGACAGGGAA, and shASAP2-3 gcCTCAAACCTTCCATTGAAA) were inserted into the GV493 vector. Lentiviruses were prepared from 293T cells transfected with GV493 vector and packaging plasmid mix (Helper 1.0 and Helper 2.0, Genechem, Shanghai, China). THP-1 cells were seeded in a 12-well plate, and the lentiviral construct (LV-ASAP2-RNAi) was transfected. After culturing at 37 °C for 12–16 h, a fresh complete medium was added to the culture. Cells were selected in 2 μg/mL puromycin, 48 h after infection, for another 48 h. Cells were then cultured in fresh medium for the next experiment or RNA-seq analysis, whereby THP-1 cells were differentiated into macrophages by adding 50 ng/mL PMA for 48 h. Our RNA-seq data are in the GEO database with accession no. GSE271201.
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4

Generating Lentiviral MET Constructs

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The MET (NM_000245) plasmid and its lentivirus were generated by GeneChem (Shanghai GeneChem CO., Ltd., Shanghai, China). The GV513 vector was used to construct a full-length c-MET plasmid and to complete the packaging of the lentivirus with Helper 1.0 and Helper 2.0 (Shanghai GeneChem CO., Ltd., Shanghai, China). Then, transfection of the lentivirus was conducted using HitransG A (Shanghai Genechem CO., Ltd., Shanghai, China), and the negative control virus CON335 (Ubi-MCS-CBh-gcGFP-IRES-puromycin, provided by Shanghai Genechem CO., Ltd., Shanghai, China) was used as a negative control virus. Cells were collected for further experiments 24 h after transfection, following the manufacturer’s recommendations. The sequences are listed in the additional Table S2.
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5

Lentiviral Vector Construction for c-Met Expression

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For application of c-Met by polymerase chain reaction (PCR), a pair of primers were designed and synthesized as follows: Forward primer: 5’-GAGGATCCCCGGGTACCGGTCGCCACCATGAAGGCTCCCACCGCGCTGGCACCTGG-3’; Reverse primer: 5’-TCCTTGTAGTCCATACCTGTGTTCGCTTCGCCGTCAATGTTGTCTTG-3’. The resulting c-Met cDNA was inserted into the lentiviral vector GV358 (sequence elements: Ubi-MCS-3FLAG-SV40-EGFP-IRES-puromycin; Shanghai Genechem Company, China) to create the lentiviral vector, GV358-c-Met. We cotransfected the recombinant and two lentiviral helper plasmids (Helper1.0 and Helper2.0; Shanghai Genechem Company, China) into 293 T cells to generate the target lentivirus with an infectious viral titer of 2 × 108 TU/mL, which was measured using a fluorescence assay method. In parallel, the control lentivirus was produced by cotransfecting the lenti-GFP empty vector GV358 with GFP but without c-Met, and two lentiviral helper plasmids (Helper1.0 and Helper2.0) into 293 T cells, and an infectious viral titer of 1 × 108 TU/mL was obtained.
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6

Lentiviral Transduction of LINC00707 in HBMSCs

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The shRNA against LINC00707 and scrambled shRNA were synthesized and cloned into the pGLVU6/GFP vector, named sh-LINC00707 and sh-NC. The LINC00707 sequence was amplified and inserted into the vector for LINC00707 overexpression, a blank plasmid vector as an NC. This work was provided by GeneChem (Shanghai GeneChem, Shanghai, China). For lentivirus packaging, we transferred 293T cells with the plasmid vector along with the packaging plasmids Helper 1.0 and Helper 2.0 (Shanghai GeneChem). HBMSCs were cultured in six-well plates and transfected with lentivirus in the presence of polybrene at a multiplicity of transfection of 50 when the cells had reached 30–40% confluence.
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