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5 protocols using cfx96 qpcr machine

1

Quantitative RT-PCR Analysis of Gene Expression in Coronary Artery

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Total RNA was extracted from the coronary artery tissues and cells using Trizol reagent (Life Technologies, Carlsbad, USA) following the manufacturer’s instructions and then reverse-transcribed to cDNA using PrimeScript RT reagent kit (Thermo Fisher Scientific). The quantitative PCR was performed by using the SYBR ® Premix Ex Taq™ reagent (BioTeke, Beijing, China) on the CFX96 qPCR machine (Invitrogen, Carlsbad, USA) with the following steps: 10 min at 95°C; 35 cycles of 15 s at 95°C, 20 s at 60°C and 15 s at 72°C. The levels of mRNAs were calculated by the 2
−ΔΔCt method, and normalized to that of
GAPDH as an internal reference. The primer sequences used in this study are listed in the
Table 2.

Table 2 Sequences of primers used in RT-qPCR

Gene

Sequence (5′→3′)

PDCD4

F: AAGAAAGGTGGTGGCAGGAGG

R: TGACTAGCCTTCCCCTCCAA

HO-1

F: CGACAGCATGTCCCAGGATT

R: TCGCTCTATCTCCTCTTCCAGG

VCAM-1

F: GATACAACCGTCTTGGTCAGCCC

R: ATTGCCACAAGCAGAAAGACA

ICAM-1

F: AAACGGGAGATGAATGGT

R: TCTGGCGGTAATAGGTGTA

p47

F: TCCCAAGTGGTTTGACGG

R: CCTCCTCTTTCTGGCTGTG

WWP2

F: GAGATGGACAACGAGAAG

R: CTCCTCAATGGCATACAG

GAPDH

F: GGTCGGGCAGGAAAGAGGGC

R: CTAATCTTCTCTGTATCGTTCC

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2

Quantitative Transcriptional Analysis of Placental Samples

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Total RNA was isolated from placental samples and cells using Trizol reagent (#B511311; Sangon Biotech). Subsequently, a total of 1 µg RNA was subjected to reverse transcription, and single-stranded cDNA was synthesized with the PrimeScript Reagent Kit (#11752050; Thermo Fisher Scientific). Then, qPCR reactions were conducted using a Power SYBR Green PCR kit (#4367659; Thermo Fisher Scientific) and performed by CFX96 qPCR machine (Invitrogen) with the following conditions: 95°C for 3 min, followed by denaturation at 94°C for 15 s, annealing at 55°C for 25 s and extension at 72°C for 15 s for 35 cycles. The relative expression levels were calculated by the 2 −ΔΔCt method after normalization to the expression of GAPDH.
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3

Quantitative Analysis of RNA Expression

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Total RNA was extracted from PC tissues and cells, and tumor tissues obtained from nude mice by using TRIzol Reagent (Invitrogen). Subsequently, a total of 1 μg RNA was reversed transcribed to cDNA by PrimeScript RT reagent Kit (Thermo Fisher Scientific, Waltham, MA, USA). The quantitative analysis of RAB11A mRNA and NORAD were performed by the SYBR ® Premix Ex Taq™ reagent (TaKaRa) and GAPDH was used as an internal control. The relative expression of miR-30a-5p was analyzed by SYBR PrimeScript miRNA RT‐PCR Kit (Takara Biotechnology, Dalian, China) with U6 as the internal control. qRT-PCR analysis was performed by CFX96 qPCR machine (Invitrogen, Carlsbad, CA, USA) with the following steps: an initial denaturation step at 95 °C for 3 min, followed by denaturation at 94 °C for 15 s, annealing at 55 °C for 25 s and extension at 72 °C for 15 s for 35 cycles. The quantification was calculated by the 2−ΔΔCt method after normalized by internal control. The specific primer sequences used in our study were provided in Additional file 1: Table S1.
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4

Quantification of KCNQ1OT1, SIRT1, and miR-128-3p

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Total RNAs were extracted from treated ATDC5 cells and cartilage tissue using RNA pure Total RNA Fast Extraction Kit (Sangon, Shanghai, China), and reversely transcribed to cDNA by PrimeScript RT reagent Kit (Thermo Fisher Scientific, Waltham, MA, USA). The quantitative analysis of KCNQ1OT1 and SIRT1 were performed by the SYBRTM Green PCR Master Mix (Applied Biosystems, Foster City, CA, USA) with β -actin as an endogenous control. The levels of miR-128-3p were analyzed by SYBR PrimeScript miRNA RT‐PCR Kit (Takara Biotechnology, Dalian, China) with U6 as the internal reference. qRT-PCR was conducted on CFX96 qPCR machine (Invitrogen, Carlsbad, CA, USA) with the following steps: 10 min at 95 °C; 35 cycles of 15 s at 95 °C, 20 s at 60 °C and 15 s at 72 °C. Data were quantified using 2−ΔΔCt method [26 (link)].
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5

Quantitative PCR of EOC Transcripts

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Total RNAs from EOC specimens and cells were isolated using TRIzol solution (AndeBio, Xuhui, Shanghai, China). Subsequently, 1 μg total RNA was reverse transcribed into cDNA using cDNA Synthesis kits (Transgen, Shijingshan, Beijing, China). Then, qPCR was conducted using a SYBR–Green Master Mix kit (TIANGEN, Haidian, Beijing, China) and performed by CFX96 qPCR machine (Invitrogen, Carlsbad, CA, U.S.A.). The housekeeping gene, GAPDH, was used as internal control. The primers are listed in Table 1. The 2−ΔΔCt method was used to calculate the relative fold changes.
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