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5 protocols using pcdh ef1 fhc

1

Engineered ORAI1 Variants for CRISPR Study

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ORAI1 (gRNA #1: GATCGGCCAGAGTTACTCCG, gRNA #2: CGGCGAAGACGATAAAGATC) gRNAs were inserted into lentiCRISPRv2-hygro (gift from Brett Stringer, Addgene plasmid # 98291). AdTRACK-CMV-hORAI1 (gift from Gregory J. Barritt) was used as a PCR template to amplify ORAI1. ECFP-ORAI1-L273D (gift from Donald L. Gill) was used as a PCR template to amplify ORAI1L273D. ORAI1-myc E106Q MO70 (gift from Anjana Rao, Addgene # 22754) was used as a PCR template to amplify ORAI1E106Q. HA-NFAT1(4-460)-GFP (gift from Anjana Rao, Addgene # 11107) was used as a PCR template to amplify NFAT1(4-460)-GFP. All PCR products were cloned into pcDH-EF1-FHC (gift from Richard Wood, Addgene plasmid # 64874) using a strong Kozak sequence (GCC ACC) in front of the starting ATG. To generate ORAI1 cDNA insensitive to CRISPR-Cas9, silent mutations (changing the DNA base pair but keeping the amino acid sequence identical) were introduced on ORAI1 cDNA PAM sequence sites by PCR-driven overlap extension.
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2

Stable High-Level Expression of Fluorescent Proteins

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pCDNA3-Flip-GFP (Casp3 cleavage seq) T2A mCherry was a gift from Xiaokun Shu (Addgene plasmid #124428) (Zhang et al., 2019 (link)). To prevent silencing and improve stability of high-level expression, the construct was re-cloned into pCDH-EF1-FHC, a gift from Richard Wood (Addgene plasmid #64874), in order to have the EF-1α promoter driving the construct (Wang et al., 2017 (link)).
293T cells were plated in antibiotic-free DMEM medium. Plasmids used were pMD2G (0.3 μg), pPAX2 (2.7 μg), and EF1α -mCherry-Flip-GFP (3 μg). Transfection was performed with Lipofectamine 2000. 16 hours later, the medium was aspirated and replaced with bovine serum albumin (BSA) enriched medium. The following day, this medium was collected, filtered and applied to BHT101 and OCUT2 cell lines in the presence of 0.8 μg/ml polybrene The next day the medium was aspirated and replaced with fresh medium. Puromycin selection was initiated with 1.5 μg/mL. After several days of selection, cells were FACS-sorted to select the population expressing the highest levels of mCherry. Cell lines were expanded in the presence of 1.5 μg/mL Puromycin.
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3

Generation of NRP1-overexpressing iTreg

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We subcloned mouse NRP1 from pCherry-mNrp1 (Addgene, cat#21934) into the
cloning site of the lentivirus vector pCDH-EF1-FHC (Addgene, cat#64874) and then
produced lentivirus using the packaging plasmids psPAX2 (Addgene, cat#12260),
and pMD2.G (cat#12259). Then SA iTreg were infected by the NRP1 lentivirus, and
the function of these iTreg was detected by performing the cytotoxicity
assay.
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4

Cloning of IRF3, TBK1, PKA and ADRB2 genes

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The genes coding for IRF3, TBK1, PKA and ADRB2 was amplified from HEK293 cDNA as a template. GCGR was amplified from GCGR-Tango (Addgene, #66,291). cDNA fragments were cloned into pRK7 (Addgene, #10,883) or pCDH-EF1-FHC (Addgene, #64,874) by Gibson assembly reaction using NEBuilder HiFi DNA assembly master mix (New England Biolabs). After purification, all plasmids were verified by Sanger sequencing.
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5

Multifaceted Genome Editing Toolkit

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Nek2A (clone ID: 38963) in pJP1563 and NuMA1 (clone ID: 871325) in pLenti6.3/V5-DEST were purchased from DNASU. LentiCRISPR-v2 (52961), pCW57-RFP-P2A-MCS (78933), pCW57-MCS1-P2A-MCS2 (80922), pCDH-EF1-FHC (64874), Flag-TurboID (124646), Tet-pLKO-neo (21916), pcDNA3-Plk4 (41165), pcDNA5-STIL (80266), PGK-H2B-mCherry (21217) and PGK-H2B-eGFP (21210) were purchased from Addgene.
Kinase-dead mutant (K37R) of Nek2A was derived from Nek2A in pJP1563 using Q5 Site-Directed Mutagenesis Kit (NEB) following the instructions of manufacturer. Oligos used for the SDM reaction are given in (Supplementary Table 2). Single guide RNA (sgRNA) oligos (Supplementary Table 3) for CRISPR/Cas9 knockout of Nek2A, C-Nap1 and Rootletin were cloned into LentiCRISPR-v2 as previously described [51 (link)]. Dox-inducible overexpressions of Nek2A and PLK4 were achieved by subcloning to pCW57-RFP-P2A-MCS and pCW57-MCS1-P2A-MCS2 respectively. Nek2A-WT and Nek2A-KD(K37R) cDNAs were subcloned to Flag-TurboID. To perform Co-IP using anti-FLAG antibody, Nek2A cDNA was subcloned into pCDH-EF1-FHC. Oligos for dox-inducible shRNA expression targeting KIF2C were cloned into Tet-pLKO-neo as previously described [52 (link)] and provided in (Supplementary Table 4).
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