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8 protocols using ddc gal4

1

Transgenic Drosophila Melanogaster Models

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Control strain in all experiments was Oregon-R obtained from the Bloomington Drosophila Stock Center, Indiana University, Bloomington, IN, USA). Transgenic flies, harboring pUAST-MycHis-WT GLA on the second chromosome, pUAST-MycHis-A156V GLA and pUAST-MycHis-A285D GLA on the third chromosome, were established by BestGene Inc. (Chino Hills, CA, USA). Da-GAL4 and Ddc-GAL4 were from Bloomington Stock Center (Indiana University, Bloomington, IN, USA). Strains were maintained on standard cornmeal-molasses medium at 25 °C.
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2

Drosophila Genetic Tools for Autophagy

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The following stocks were obtained from Bloomington Drosophila Stock Center: ApplGal4 (#32040), Ddc-Gal4 (#7009), UAS-myrGFP (#32199), UAS-HTT.16Q/CyO (#33810), UAS-HTT.128Q (#33808), w1118 (#5905), UAS-Hsap\SNCA.A53T (#8148), Mi{MIC}EDTPMI08496(#44782), Df(2 R)BSC161 (#9596), P{EPgy2}EDTPEY22967(#22600), cgGal4 (#7011), UAS-GFP-2xFYVE (#42712). UAS-Parkin-R275W/TM3 was kindly provided by Ng Chee Hoe (NNI, Singapore)41 (link), UAS-mCherry-Atg8a48 (link), hsFlp; pAct < CD2 < Gal4,UAS-nlsGFP, r4-mCherry-Atg8a40 (link); hsFlp; r4-mCherry-Atg18a; pAct < CD2 < Gal4,UAS-nlsGFP, and outcrossed Syx17LL06330 mutants40 (link) were gifts from Gabor Juhasz (Eötvös University, Budapest, Hungary). Fly stocks were raised on standard cornmeal-sugar agar medium at 18–25 °C. L3 feeding larvae were treated for 3 hours prior to dissections. Animals were placed into a suspension consisting of instant yeast medium, supplemented by AUTEN-99 solved in DMSO (Sigma, D8418) or the same volume of DMSO only for untreated samples. For analyzing adult animals, flies were placed into vials containing treated medium immediately after eclosion and kept at 29 °C during the entire experiment. AUTEN-99 dissolved in DMSO was added to yeast suspension (final concentration was 100 or 200 μM), and dropped 65 μl to the surface of each vials. Flies were transferred into a fresh vial in every second day.
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3

Drosophila Genetic Assay with p32 Inhibitor

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Standard food media containing yeast, cornmeal, dextrose, bacto agar and the anti-microbial agent were prepared. The p32-inhibitor containing food was prepared by mixing it into the prepared fly media together with a drop of food coloring to assure uniform mixing. Fly stocks were kept at 20 °C and crosses were performed at 25 °C in a humidified incubator. The Drosophila lines yw (control), GMR-GAL4, Ddc-GAL4 and 24B-GAL4 were obtained from Bloomington Drosophila stock center (USA). The hCHCHD2 transgenic lines were generated previously [51 (link)]. The p32-RNAi line was from the Vienna Drosophila Resource Center.
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4

Transgenic Drosophila Model of VPS35

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The following flies were used in this study: dopa decarboxylase (ddc)-GAL4 and yellow white (yw) (Bloomington Drosophila Stock Center). Human VPS35-expressing flies were created by generating transgenic human VPS35 wild type or mutant (P316S, D620N and L774M) cDNA containing a Hemagglutinin (HA) tag at the C-terminus and inserted into the pUAST-attB plasmid, which will allow the UAS constructs to land into a chosen attP site in the fly genome during microinjection. Constructs were then sent for microinjection into Drosophila embryos (BestGene). Flies were raised on standard yeast-cornmeal-agar medium at 25°C with 12-hour light and dark cycle.
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5

Drosophila Neurodegeneration Assay Protocol

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Promoter lines containing ddc-GAL4 were obtained from Bloomington Drosophila Stock Center (Bloomington, IN, USA). The human A30P α-syn transgenic fly line (P{UAS-Hsap\SNCA.A30P}40.1, deposited by Prof. Nancy Bonini, University of Pennsylvania) expressing UAS controlled human mutant A30P α-syn is purchased from Bloomington Drosophila Stock Center (Bloomington, IN, USA). Yellow white control or transgenic α-syn A30P mutant flies were crossed with ddc-GAL4 lines to induce overexpression of α-syn specifically in DA neurons in transgenic fly heads. Flies were routinely raised at 25 °C on cornmeal media for 30 days in the presence or absence of 2 mM NAC, GA, TA, and l-cys before assessments of fly climbing behavior and analysis of DA content and TH positive DA neuron numbers in fly heads. For the climbing assay, motor ability was assessed at 15 min interval using the negative geotaxis assay. Briefly three cohorts of 20 female and age-matched control flies were anesthetized and placed in a vertical plastic column (length, 25 cm; diameter, 1.5 cm). After a 2 h recovery period, flies were tapped to the bottom and the percentage of flies that climb to or above the top column line in 1 min was calculated. Triplicate trials were performed in each experiment at 15 min interval.
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6

Fly Genetic Tools for Studying Rab5 and Rab11

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Flies carrying the UAS-Rippase followed by a short PEST sequence (aa 422–461 of the mouse ornithine decarboxylase gene) to decrease its half-life and potential toxicity (pJFRC165-20XUAS-IVS-R::PEST in attP2) were from Gerald Rubin (Janelia Farms, Ashburn, VA, USA); Alrm-Gal4 was from Marc Freeman (UMASS Medical School, Worcester, MA, USA), C380-Gal4 and C57-Gal4 were from Vivian Budnik (UMASS Medical School, Worcester, MA, USA), UAS-GFP-Rab5 from Marcos Gonzalez-Gaitan (University of Geneva, Switzerland) and GFP-Rab5 knock-in flies (Fabrowski et al., 2013 (link)) from Stefano De Renzis [European Molecular Biology Laboratory (EMBL) Heidelberg, Germany]. YFP-HA-Rab11 knock-in flies (Dunst et al., 2015 (link)) were from Marko Brankatschk (Max Planck Institute of Molecular Cell Biology and Genetics, Germany), Hemese-Gal4 (#8699), Repo-Gal4 (#7415), ddc-Gal4 (#7009) and w; Df(exel)6078/CyO (#7558) were from the Bloomington Drosophila Stock Center.
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7

Fly Genetics and Behavior Analysis

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All flies were harvested at 25°C, 12 h/12 h light and dark cycles, in 60% humidity. The conventional food containing 4% cornmeal, 8% glucose, 2.4% dry yeast powder, 1% wheat germ, 0.8% agar and 0.8% propionic acid was used. We used PBac{WH}Octα2Rf03483 (#18659), RNAi control fly (#35786), UAS‐Octα2R RNAi (#50678), Octα2R Trojan‐Gal4 (#67636), Octα2R T2A‐Gal4 (#84610), Octα2R T2A‐LexA (#84370), Tdc2‐Gal4 (#9319), DDC‐Gal4 (#7009), R24B11‐Gal4 (#49070), R69F08‐Gal4 (#39499), R46H04‐Gal4 (#50280), R30G03‐Gal4 (#49646) and UAS‐mCD8::RFP, LexAop2‐mCD8::GFP (#32229) from the Bloomington Drosophila Stock Center. NP0010 was obtained from the Kyoto Stock Center. TH‐Gal4 was gifted from Dr. Jay Hirsh, OK371‐Gal4 was gifted from Dr. Hermann Aberle, GAD‐Gal4 was gifted from Dr. Takaomi Sakai, dilp2‐Gal4 was gifted from Dr. Linda Partridge and 121Y‐Gal4 and 30Y‐Gal4 were gifted from Dr. J. Douglas Armstrong.
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8

Drosophila Genetic Manipulation Techniques

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Fly stocks and crosses were cultured on a standard medium composed of cornmeal, molasses, yeast, and agar, and treated with propionic acid and methylparaben to inhibit fungal growth. The stocks were raised at 23° ± 2°C, while the crosses and experiments were performed at 25° and 29°C, respectively. The CG4495 RNA interference lines, w 1118 ; P{GD4927}v49349 and w 1118 ; P{GD4927}v49350, hereafter referred to as UAS-MICU1-RNAi ( 1) and UAS-MICU1-RNAi (2), respectively, were obtained from the Vienna Drosophila Resource Center (Vienna, Austria). The UAS-Buffy (Quinn et al., 2003) (link) was kindly provided by Dr. L. Quinn (University of Melbourne, Melbourne, Australia) and Ddc-Gal4 flies (Li et al., 2000) (link) by Dr. J. Hirsch (University of Virginia, USA). GMR-Gal4 (Freeman, 1996) (link) and UAS-lacZ flies were obtained from the Bloomington Drosophila Stock Center (Indiana University, USA).
The UAS-Buffy/CyO; Ddc-Gal4 and UAS-Buffy/CyO; GMR-Gal4 derivative lines were generated by using the standard homologous recombination methods, and were used for overexpression of Buffy in neurons using the Ddc-Gal4 transgene or in the developing eye using the Glass Multiple Reporter (GMR) response elements following a standard protocol described previously (M'Angale and Staveley, 2016b, c) .
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