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8 protocols using g box chemi xl1

1

Protein Isolation and Western Blot Analysis

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Proteins were isolated by lysing the cells with RIPA buffer (150 mM sodium chloride, 1% NP-40, 0.5% sodium deoxycholate, 0.1% SDS, 50 mM Tris, 1% PMSF, and a cocktail inhibitor for proteases and phosphatases), and the concentration of protein was determined by the BCA assay kit (Solarbio, Beijing, China). After SDS-PAGE separation, protein was transferred to a PVDF membrane (Millipore, Burlington, MA, USA). The PVDF membrane was blocked with 0.5% BSA for 2 h, and then incubated with the primary antibody for 2 h at room temperature. After TBST wash, the PVDF membrane was incubated with the corresponding horseradish peroxidase (HRP)-conjugated secondary antibody for 2 h at room temperature. The membrane was visualized by ECL plus (Bio-rad, Hercules, CA, USA) and examined with G:BoxChemiXL1.4 (Syngene, Cambridge, UK).
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2

Western Blot Analysis of Myocardial Proteins

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Protocols were adapted from our previous work [28] (link). In brief, frozen myocardium tissue was ground in liquid nitrogen. Then ≅50 mg myocardium tissue powder was lysed in 500 µl lysis buffer containing 1∶100 protease inhibitor cocktail, 2 mM Na3VO4 and 10 mM NaF. Samples were sonicated (MicrosonTM XL-2000, Qsonica LLC. Newtown, CT, USA) and centrifuged at 14,000 g for 30 min. Supernatant protein concentrations were measured (Bio-Rad Laboratories (S) Pte Ltd, Singapore) and 25 µg of each sample was loaded onto 5 to 14% SDS-PAGE gels and electrophoresed. After over-night transfer at 30 V (4°C), membranes were immunoblotted with antibodies recognizing (i) p-Akt (Ser473), (ii) p-Akt (Thr308), (iii) total Akt, (iv) p-PTEN(Ser380/Thr382/383), (v) total PTEN, (vi) PDK1, (vii) PP2A, (viii) p-Bim (Ser69), (ix) total Bim, (x) Bcl-2, (xi) Bax, (xii) p-mTOR (Ser2448), and (xiii) total mTOR (Cell Signaling Technology, Research Biolabs Pte Ltd, Singapore), and (xiv) PHLPPL (Santa Cruz Biotechnology Inc., TWC BIO Pte Ltd, Singapore). GAPDH (Abcam, Abcell Pte Ltd, Singapore) was used as loading control. The chemiluminescence signal was captured with G:Box Chemi XL 1.4 (Syngene, Insta BioAnalytik Pte Ltd, Singapore), intensity was calculated with ImageJ software (www.imagej.nih.gov) and protein expression was normalized to total Akt, PTEN, Bim, Bcl-2, mTOR or GAPDH.
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3

Western Blot Analysis of Arterial Proteins

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Protein extracts were prepared from mesenteric arteries pooled from 3 mice (each treatment) unless stated otherwise. Segments were homogenized in cold PBS buffer in a glass dounce homogenizer and treated with M-Per (Pierce, Rockford, IL, USA). The homogenate was centrifuged at 15 000 g for 15 min at 4°C. Protein concentration was determined with the BCA protein assay kit (Pierce Chemical, Rockford, IL, USA). Western analysis was performed using the Bio-Rad mini protean system. Equal amounts of protein were resolved on a 6–15% SDS-PAGE. Following electrophoresis, protein was transferred to a nitrocellulose (Hybond-ECL, GE Healthcare, Marlborough MA USA) or PVDF membrane, immunoblotted with respective primary antibodies, and visualized by the ECL system (GE Healthcare) using appropriate secondary antibodies conjugated with HRP IgG. Some of the images were acquired with G:BOX Chemi XL1.4 (Syngene, Frederick, MD, USA) using West Femto reagent from Pierce.
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4

Quantitative Western Blot Analysis

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The cell lysates were prepared on ice in PRO-PREP Protein Extraction Solution (iNtRON Biotechnology, Gyeonggi-do, Korea) containing a protease/phosphatase inhibitor cocktail (GeneDEPOT, Barker, TX, USA). The protein concentration was determined using a Pierce™ BCA Protein Assay Kit (Thermo Fisher, Waltham, MA, USA). The cell lysates (30 μg) were separated on 8–15% SDS–polyacrylamide gel and transferred to the PVDF membrane. The membranes were incubated with appropriate primary antibodies in Tris-buffered saline with 0.1% Tween 20 (TBST) containing 3% BSA. The sources and working dilutions of the antibodies are summarized in Supplementary Table S1. The bands on the PVDF membrane were detected with G:BOX Chemi XL1.4 (Syngene, Frederick, MD, USA) using EzWestLumi plus (ATTO, Tokyo, Japan) and the band intensities were quantified using the ImageJ program. All uncropped scans of Western blots are shown in the Supplementary Information.
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5

Western Blot Analysis of THP-1 Cell Lysates

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THP-1 cells were lysed in protein lysis solution containing 10 mM Tris-HCl (pH 7.5), 150 mM NaCl, 0.5 mM EDTA, 0.5% (v/v) NP-40 (Merck), 1 mM phenylmethylsulfonyl fluoride (Merck) with freshly added 1X cOmplete EDTA-free protease inhibitor cocktail solution (Merck). Whole cell lysates were then separated on 10–15% SDS-PAGE gels and transferred to Hybond ECL nitrocellulose membranes (Merck). The membranes were blocked with 5% (w/v) non-fat dry milk in Tris-buffered saline (TBS) containing 0.1% (v/v) Tween 20 (TBST) for 1–2 h. The membranes were then incubated with diluted primary antibody in 5% (w/w) non-fat dry milk—TBST at 4 °C overnight. The primary antibodies and dilutions are listed in Supplemental Table S1. After washing three times for 5–10 min with TBST, the membranes were incubated with the corresponding secondary antibody as listed in Supplemental Table S1, at room temperature for 2 h, followed by three 10 min washes with TBST. The chemiluminescent signal was developed on membranes using Amersham ECL Select Western Blotting Detection Reagent (Merck) to detect the respective proteins, and images were obtained with G:Box ChemiXL1.4 (Syngene, Bangalore, India). Densitometric analyses were performed using Fiji software [60 (link)].
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6

Western Blot Analysis of Protein Targets

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The total protein in the cells was extracted with radioimmunoprecipitation (RIPA) lysate premixed with phenylmethylsulfonyl fluoride (PMSF). After separating with 10% SDS-PAGE gel, transferring the isolated proteins on a PVDF membrane, and then blocked with 5% skim milk in TBST buffer. And then incubated separately in antibody at 4 °C overnight (Anti-MET Antibody, Bioss, 1:1000 dilution; Anti-TBL1XR1 Antibody, Bioss, 1:1000 dilution; Anti-p-Pi3k, CST, 1:1000 dilution; Anti-p-Akt Antibody, CST, 1:1000 dilution; Anti-GAPDH antibody, CST, 1:1000 dilution). The bands were washed 3 times with TBST solution for 10 min each time, and then incubated with the appropriate HRP-conjugated antibody (Abcam, 1:2000 dilution) on the shaker for 2 h at room temperature. Finally, the musical groups were cleansed using TBST solution strips on the shaker. The strips were then subjected to exposure in an exposure machine, utilizing the GBOX-chemi-XL1.4 from SYNGENE.
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7

Gastrocnemius Muscle Protein Analysis

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Frozen tissues were transferred into 0.5 ml of buffer D (mM: 250 sucrose, 1 Tris-HEPES, 1 EDTA, pH 7.4) with a standard protease and phosphatase inhibitor cocktail (Millipore Sigma, Burlington, MA, USA) and then homogenized using a Polytron homogenizer (Kinematica, Bohemia, NY, USA). Protein concentrations were determined using the bicinchoninic acid assay as per the manufacturer’s instructions using bovine serum albumin as the standard (Thermo Fisher Scientific, Waltham, MA, USA). Twenty micrograms of total protein from gastrocnemius muscle homogenate or 10 micrograms of isolated plasma membranes were loaded and separated on Bis-Tris gels and transferred onto nitrocellulose membranes. After membrane blocking and incubation in primary antibody, membranes were incubated with the appropriate secondary peroxidase-labeled antibodies for 1 h. After washing, bands were visualized using enhanced chemiluminescence (ECL) detection reagents (GE Healthcare, Chalfont St Giles, UK). Blots were stripped and re-probed for GAPDH as a loading control. Analysis of the blots was performed by densitometry using G: Box ChemiXL1.4 (Syngene, Cambridge, United Kingdom). The expression of the target proteins was normalized to GAPDH expression.
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8

Transcriptional analysis of Nrg1 in HMVEC cells

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After appropriate treatments, total cellular RNA was isolated from HMVEC using Trizol reagent as per manufacturer’s instructions (Life Technologies). Reverse transcription was performed with the High-Capacity cDNA Reverse Transcription Kit (Applied Biosystems) following the supplier’s protocol. The cDNA was used as a template for polymerase chain reaction (PCR) using specific primers. The primers used are as follows: human Nrg1, 5′-GACCTCTACTTCTCGTGACA-3′ (forward) and 5′- TCCAATCTGTTAGCAATGTG -3′ (reverse); human β-actin, 5′- TCTAGGCACCAAGGTGTG-3′ (forward), and 5′-TCATGAGGTAGTCCGTCAGG-3’ (reverse). The PCR performed on T-100 thermal cycler (Bio-Rad, Hercules, CA). The amplified RT-PCR products were separated on 1.6% (w/v) agarose gels and stained with ethidium bromide, pictures were captured using G:BOX Chemi XL1.4 (Syngene, Frederick, MD).
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