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10 protocols using grp75

1

Mitochondrial Dynamics Reagent Protocol

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N-2-hydroxyethylpiperazine-N′-2-ethanesulfonic acid (HEPES), HEPES (sodium salt), HEPES (free acid), Tetramethylrhodamine (TMRM, T668), the AlamarBlue cell viability reagent (DAL1025), the NUPAGE LDS sample buffer (4×) from Novex, the Complete Mini Protease Inhibitor cocktail from Roche Applied Sciences and the BCA Assay Kit from Pierce, the RIPA lysis buffer 10× from Millipore were all provided by Fisher Scientific. Lipofectamine2000 Transfection reagent (11668019) was purchased from Thermo Fisher Scientific. Rhodamine123 (R8004), LysoTracker Green (DND-26), DL-dithiothreitol (DTT; D0632) and β-mercaptoethanol were purchased from Sigma Aldrich. Mouse Anti-Opa1 monoclonal antibody (1:2000) was purchased by BD Biosciences (#612607). β-actin (1:2000) and GRP-75 (1:2000) antibodies were purchased from Santa Cruz Biotechnology (#sc-47778 and SC-133137, respectively). Anti-mouse and anti-rabbit HRP secondary antibodies were provided by GE Healthcare (#GENA931 and A0545, respectively). GAPDH, glyceraldehyde-3-phosphate dehydrogenase (ab8245), was purchased from Abcam.
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2

Immunoblotting Antibody Characterization

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DNAJC11 antibody for HeLa cells experiments was purchased from Abnova and for mouse tissue from Proteintech; Mitofilin, CHCHD6 and CHCHD3 from Abcam; SDHA from Invitrogen; Hsp60 from Stressgen; Tim23 from BD Transduction Laboratories; Grp75 and GAPDH from SantaCruz Biotechnology; Prohibitin from NeoMarkers; ICDH from Biogenesis; SAM50 and Metaxin antibodies were raised in rabbits against a full-length 10xHis-tagged protein.
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3

Mitochondrial Protein Antibody Panel

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The following primary antibodies were used in this work: yeast porin (MSA08; Mitoscience, Cambridge, UK), V5 (R960‐25; Invitrogen, Carlsbad, CA, USA), HA (11 867 423 001; Roche, Basel, Switzerland), TOM20 (sc‐11415; Santa Cruz, Dallas, TX, USA), OPA‐1 (612606; BD Biosciences, San Jose, CA, USA), GRP75 (sc‐13967; Santa Cruz, Dallas, TX, USA), ADCK4 (LS‐C119206; LsBIO, Seattle, WA, USA), SCO2 (sc‐49110; Santa Cruz, Dallas, TX, USA), SDHA (459200; Molecular Probes, Eugene, OR, USA), human porin (MSA03; Mitoscience, Cambridge, UK), and CytC (556433; BD Pharmigen, San Diego, CA, USA).
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4

Immunostaining of SV40-transformed H9c2 Cells

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SV40-transformed H9c2 cells (20,000 cells per well) were fixed on Millicell EZ slide 8-well (cat. #PEZGS0816) glass plates by paraformaldehyde 2%, permeabilized by 0.1% Triton X-100, and blocked during 45 min in BSA 5% diluted in PBS−/− (phosphate-buffered saline, 1 X, without calcium and magnesium). IP3R antibodies were obtained from Santa Cruz (cat. #sc-7278; 1:250), GRP75 from Santa Cruz (cat. #sc133137; 1:250), and TRPV1 from Abnova (cat. #PAB0698; 1:250). Cells were incubated with primary antibodies for 90 min. As for the secondary antibodies, anti-mouse, anti-rabbit, and anti-goat conjugated to fluorophores Alexa 488 or 647 were used at 1:1000, purchased from GE Healthcare and Santa Cruz. After a 90 min incubation with a secondary antibody, wells were left to dry, and the mounting medium (containing DAPI) was dropped. A cover slide was finally added. Fluorescent immunostaining was measured using a Nikon Eclipse Ti confocal microscope. The microscope was equipped with a 60× oil immersion objective. Images were processed with NIS software (Nikon). Alexa-488 was excited at 488 nm and Alexa-647 at 642 nm. Their respective emitted fluorescent lights were collected at wavelength 525/50 nm using a GaAsP detector and at wavelength 700/50 nm using a PMT detector.
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5

Quantitative Analysis of Mitochondrial Proteins

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Kidney tissues were harvested and processed for Western blotting as describe previously[19 (link), 21 (link)]: The primary antibodies used were anti-MCU (Cell Signaling #D273B), anti-MCUR1 (Invitrogen #PA5-95628), GRP75(SantaCruz #sc-133137), Tom20 (SantaCruz #sc-17764) VDAC1 (SantaCruz, #sc-390996) anti-vinculin (SantaCruz #sc-73614), and anti-VDAC3 (Aviva #OAAB12510). The secondary antibody used was anti-rabbit IgG (Cell Signaling# 7074s). PDHX (Proteintech #0951-1-AP). All primary antibodies were used at 1μg/ml (1:1000 dilution), and the secondary antibody was used at a 1:8000 dilution.
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6

Comprehensive Antibody Validation for Western Blot and Immunofluorescence

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We used the following antibodies for western blotting: P‐AKT (S473; ref. 4060), P‐S6 (S240/244; ref. 5364), S6 (ref. 2217), AKT (ref. 9272), GSK‐3β (ref. 9315), P‐GSK‐3β (S9; ref. 9322), P‐4E‐BP1 (Ser65; ref. 9451), P‐4E‐BP1 (Thr37/46; ref. 2855), 4E‐BP1 (ref. 9644), RAPTOR (ref. 2280), RICTOR (ref. 2114), mTOR (ref. 2983), P‐AMPK (T172; ref. 2531), P‐ULK1 (Ser757; ref. 6888), SDH (ref. 11998) from Cell Signalling, LC3 (ref. L7543) and p62 (ref. P0067) from Sigma, GAPDH (ref. 8245), Mitoprofile (ref. 110413) and TOM20 (ref. 56783) from Abcam, actin (ref. 56459), and GRP‐75 (ref. 13967) and Porin1 (ref. 390996) from Santa Cruz. For immunofluorescence, LAMP1 (ref. 1D4B), embryonic MyHC (ref. BF‐G6), and types I, IIa, and IIb MyHC (ref. BAD5, SC‐71, and BF‐F3, respectively) were from Developmental Studies Hybridoma Bank, mTOR was from Cell Signalling, distrophin (ref. 15277) from Abcam, NCAM (ref. 5032) was from Millipore, and α‐bungarotoxin Alexa Fluor 555‐conjugate (ref. B35451) was from Invitrogen.
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7

Mitochondrial Protein Analysis by Western Blot

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Western blot analysis was performed as previously described [69 (link)]. The following primary antibodies were used: Mfn2 (sc-100560, 1:1000; Santa Cruz Biotechnology, Dallas, TX, USA); Opa1 (sc-30572, 1: 1000, Santa Cruz Biotechnology); DRP1 (sc-3298, 1:1000; Santa Cruz Biotechnology); SOD2 (PA5-30604, 1:1000, Thermo Scientific, Waltham, MA, USA); GRP75 (sc-13967, 1:2000; Santa Cruz Biotechnology). GAPDH (ab8245, 1:2000, Abcam, Cambridge, UK) was used as a loading control guide to normalize protein levels in samples. Appropriate secondary antibody anti-mouse, anti-rabbit (1:10,000; Bio-Rad Laboratories, Hercules, CA, USA) or anti-goat (1:5000, Santa Cruz Biotechnology) were used.
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8

Mitochondrial Protein Expression Analysis

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Crude mitochondria and BAT were lysed in RIPA buffer (50 mM Tris-HCl, pH 8.0, 150 mM NaCl, 12 mM deoxycholic acid, 0.5% Nonidet P-40, and protease and phosphatase inhibitors). Protein samples were used for SDS-PAGE followed by Western blotting. Nitrocellulose membranes were stained with primary antibodies against α-Actin, TOMM20, GRP75, H2B (Santa Cruz Biotechnologies, Dallas, TX, USA), vDAC, SDHB, UQCRC2, MTCo1 (Abcam, Cambridge, UK), FoxO1 (Cell Signaling Technologies, Danver, MA, USA), Drp1, OPA1 (BD Transduction Laboratories™, San Jose, CA, USA), SDHA, NDUF8 (MitoSciences, Eugene, OR, USA) all diluted 1:1000. Afterward, the membranes were incubated with the appropriate horseradish peroxidase-conjugated secondary antibody, and immunoreactive bands were detected by a Fluorchem Imaging System upon staining with ECL Selected Western Blotting Detection Reagent (GE Healthcare, Pittsburgh, PA, USA). Immunoblots reported in the figures are representative of at least three experiments that gave similar results.
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9

Protein Extraction and Western Blot Procedure

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Cells were lysed in 62.5 mmol/L Tris (pH 6.8)-2% sodium dodecyl sulphate (SDS) mixed with the protease inhibitor cocktail (Sigma) and briefly sonicated before determining the protein concentration using the BCA reagent (Pierce, Rockford, IL, USA). A 50 µg of protein was resolved by SDS-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to a polyvinylidene difluoride membrane filter (Bio-Rad, Hercules, CA, USA). Membrane filters were blocked in 0.1 M Tris (pH 7.5)-0.9% NaCl-0.05% Tween 20 with 5% nonfat dry milk, and incubated with appropriate antibodies. Antibodies were diluted as follows: glyceraldehyde-3-phosphate dehydrogenase (GAPDH), 1:5,000; poly(ADP-ribose) polymerase (PARP), 1:1,000; cleaved lamin A, 1:2,000; β-actin, 1:10,000; cytochrome c oxidase (COX IV), 1:2,000 (Cell Signaling, Danvers, MA, USA); RET, 1:1,000; TP53, 1:1,000; GRP75, 1:2,000 (Santa Cruz Biotechnology, Santa Cruz, CA, USA); E2 promoter binding factor 1 (E2F-1), 1:1,000 (NeoMarkers, Fremont, CA, USA); Ki-67, 1:1,000 (Dako, Glostrup, Denmark); peroxisome proliferator-activated receptor gamma coactivator 1α (PGC-1α), 1:2,000 (Abcam, Cambridge, UK). The Supersignal West Femto and Pico chemiluminescence kits (Pierce) were used for visualization of the signal. Images of immunoblots were taken and processed using ChemiDoc XRS+ and Image Lab 3.0 (Bio-Rad).
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10

Western Blot Analysis of Cellular Proteins

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Prepared SDS‐PAGE protein samples were loaded to and run on 15% SDS‐PAGE gels, and transferred to PVDF membranes. Membranes were blocked with 5% nonfat milk‐PBS at room temperature for 1 hour and subsequently probed with one of the following antibodies according to experiments: GAPDH (#MAB374; Millipore), LC3 and p62 antibodies (#4108 and 5114; Cell Signaling), VDAC1, cytochrome C, FALC4, and PEN2 (#ab14734, ab110325, ab155282, and ab18189; Abcam), and Grp75 (#sc‐133173; Santa Cruz Biotechnology). The membranes were then rinsed and incubated with corresponding horseradish peroxidase‐conjugated secondary antibodies (#170‐6515 and 170‐6516; Bio‐Rad). Antibody dilutions and incubation time were according to manufacturer's instructions. At the end, membranes were rinsed and bound antibodies were detected by using SuperSignal West Pico Chemiluminescent Substrate (#34077; ThermoFisher Scientific).
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