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Rna 6000 nano and pico total rna kits

Manufactured by Agilent Technologies
Sourced in United Kingdom

The RNA 6000 Nano and Pico total RNA kits are lab equipment designed for the analysis of total RNA. The kits provide a standardized method for the analysis of total RNA samples using the Agilent Bioanalyzer system.

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4 protocols using rna 6000 nano and pico total rna kits

1

Extraction and Characterization of EV-Associated RNA

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Total RNA from cells and isolated EVs was extracted using Tri‐Reagent (Sigma–Aldrich, Dorset, UK), as per the manufacturer's instructions. RNA samples were eluted in 11 µl of RNAse‐free water, aliquoted, and stored at –80°C. The size profile of isolated RNA was measured by capillary electrophoresis, using RNA 6000 Nano and Pico total RNA kits (Agilent Technologies UK Ltd, Cheshire, UK), in an Agilent Bioanalyzer 2100 instrument (Agilent Technologies UK Ltd). To assess purity of EV‐associated RNA, isolated EVs were incubated with proteinase K (0.05 µg/µl; Sigma–Aldrich) for 10 min at 37°C. proteinase K activity was inhibited by the addition of PMSF (5 mM; Sigma–Aldrich) for 10  min at room temperature, followed by further incubation at 90°C for 5 min. EVs were then incubated with RNase A (0.5 µg/µl) for 20 min at 37°C to degrade unprotected RNA. For Control samples, PBS was added in place of proteinase K, PMSF, and RNase A. Prior to further analysis, RNA concentration was assessed by NanoDrop™ 2000 spectrophotometer (ThermoFisher Scientific), as per the manufacturer's instructions, and used to normalise sample input.
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2

Efficient RNA Extraction from Small Extracellular Vesicles

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RNA was isolated from all sEV fractions using the miRCURY RNA Isolation Cell and Plant kit (Exiqon A/S, Vedbaek, Denmark) with 1% 2-mercaptoethanol in the lysis buffer and following the manufacturer´s protocol. The optional on-column DNA removal protocol was applied to ensure the maximum removal of residual DNA from the RNA isolations. For that, 0.25 U of DNase I was added to each column and incubated at 37°C for 30 min according to the manufacturer´s recommendations. One microliter of the RNA from each sample was denatured at 72°C for 2 min, and the RNA concentration and size was measured with a Bioanalyzer 2100 using the RNA 6000 Nano and Pico total RNA kits (Agilent Technologies) according to the manufacturer´s protocol. RNA was also quantified using RNA BR and HS Assay kit using a Qubit 2.0 Fluorometer.
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3

Isolation and analysis of RNA from cells and EV subpopulations

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Total RNA from cells and EV subpopulations was isolated using the miRNAeasy micro kit (Qiagen, Hilden, Germany), according to the manufacturer´s instructions. RNA samples were eluted in 14 μL of RNAse-free water, aliquoted, and stored at -80 °C. The quality and sized of the isolated RNA was measured by capillary electrophoresis using an Agilent Bioanalyzer 2100 (Agilent Technologies, Santa Clara, CA, USA). RNA from each sample was denatured at 72 °C for 2 min and loaded into RNA 6000 Nano and Pico total RNA kits (Agilent Technologies) to analyze RNA profile and concentration. The RNA concentration was used as a normalizing loading factor for all EV samples.
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4

Isolation and Analysis of RNA from Cells and Extracellular Vesicles

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Total RNA from cells
and EVs was isolated using the miRNeasy micro kit (Qiagen, Hilden,
Germany), according to the manufacturer’s instructions. The
same number of EVs were used for the RNA isolation (3.5 × 109 particles/sample measured by nFCM). RNA samples were eluted
in 14 μL of RNase-free water and immediately proceeded to downstream
analysis without freeze–thaw cycles. The size and quality of
the isolated RNA were measured by an Agilent Bioanalyzer 2100 (Agilent
Technologies, Santa Clara, CA). RNAs from each sample were denatured
at 72 °C for 2 min and loaded into RNA 6000 Nano and Pico total
RNA kits (Agilent Technologies) to analyze RNA concentration.
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